Escherichia coli LR-46 |
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Putative Escherichia coli LR-46 RM systems
Ref: Hoang,H.T.T. et al. unpublished
REBASE ref # 37785
| Sequence length: | GenBank #: | |
| Chromosome: | 4,830,163 bp | AP027537 |
| plasmid pLR-46_1: | 231,520 bp | AP027538 |
REBASE acronym: EcoLR46
Org_num: 72634
All begin VEE30_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1800 | IS5 family transposase | |||
| ??? | S | S2.EcoLR641ORF28660P (100% identity) | S2.EcoLR46ORF1830P | |
| 1810 | R | EcoW1316ORF930P (100% identity) | EcoLR46ORF1830P | |
| 1820 | S | S.EcosS142ORF43560P (99% identity) | S1.EcoLR46ORF1830P | |
| 1830 | M | M.Eco45C21ORF22855P (99% identity) | M.EcoLR46ORF1830P | |
| 1840 | 290 aa hypothetical protein | |||
| 10450 | metal-dependent hydrolase | |||
| 10460 | R | Eco1272IP (99% identity) | EcoLR46ORF10490P | |
| 10470 | 227 aa hypothetical protein | |||
| 10480 | S | S.EcoPSJ29ORF17920P (100% identity) | S.EcoLR46ORF10490P | |
| 10490 | M | M.EcoPSJ29ORF17920P (100% identity) | M.EcoLR46ORF10490P | |
| 10500 | 376 aa hypothetical protein | |||
| plasmid pLR-46_1 | ||||
| 46000 | 168 aa hypothetical protein | |||
| 46010 | R | Efe44C21ORF22625P (99% identity) | EcoLR46ORF46030P | |
| 46020 | S | S1.Efe44C21ORF22625P (100% identity) | S.EcoLR46ORF46030P | |
| 46030 | M | M.EcoS1632ORFBP (100% identity) | M.EcoLR46ORF46030P | |
| 46040 | 73 aa hypothetical protein | |||
| 46320 | IS6 family transposase | |||
| 46330 | S | S.Pst645ORF7005P (30% identity) | S.EcoLR46ORF46330P | |
| 46340 | 366 aa hypothetical protein | |||
| 46350 | R | SflSTLE3ORF22785P (99% identity) | EcoLR46ORF46330P | |
| 46360 | 90 aa hypothetical protein | |||
| 46680 | IS6 family transposase | |||
| 46690 | S | S.SflFF64ORF5405P (55% identity) | S.EcoLR46ORF46700P | |
| 46700 | M | M.Eco03C12ORF22110P (100% identity) | M.EcoLR46ORF46700P | |
| 46710 | 66 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 17310 | ribosome-associated inhibitor A | |||
| 17320 | M | M.SenYU39ORF1896P (100% identity) | M.EcoLR46ORF17320P | |
| 17330 | 98 aa hypothetical protein | |||
| 18060 | chromosome partitioning protein ParB | |||
| 18070 | RM | Eho69CZORF8365P (98% identity) | EcoLR46ORF18070P | |
| 18080 | transposase | |||
| 24080 | DNA-binding protein Fis | |||
| 24090 | M | M.Ssp28760ORF20045P (100% identity) | ATGCAT | M.EcoLR46ORF24090P |
| 24100 | acrEF/envCD operon repressor | |||
| 25280 | ribulose-phosphate 3-epimerase | |||
| 25290 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoLR46DamP |
| 25300 | cell division protein DamX | |||
| 32130 | 57 aa hypothetical protein | |||
| 32140 | M | M.SflLIN17ORF20615P (100% identity) | GATC | M.EcoLR46ORF32140P |
| 32150 | LexA family transcriptional regulator | |||
| 38350 | 71 aa hypothetical protein | |||
| 38360 | M | M.EcoC1737ORF19910P (100% identity) | M.EcoLR46ORF38360P | |
| 38370 | exonuclease | |||
| 43840 | transposase | |||
| 43850 | R | Esp911AORF970P (99% identity) | GGTNACC | EcoLR46ORF43860P |
| 43860 | M | M.Esp911AORF970P (100% identity) | GGTNACC | M.EcoLR46ORF43860P |
| 43870 | 213 aa hypothetical protein | |||
| 44280 | 75 aa hypothetical protein | |||
| 44290 | M | M.SdyFF10ORF5495P (99% identity) | GATC | M.EcoLR46ORF44290P |
| 44300 | replication endonuclease from | |||