Escherichia coli LR-33 |
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Putative Escherichia coli LR-33 RM systems
Ref: Hoang,H.T.T. et al. unpublished
REBASE ref # 37785
| Sequence length: | GenBank #: | |
| Chromosome: | 4,844,939 bp | AP027523 |
| plasmid pLR-33_1: | 50,339 bp | AP027524 |
REBASE acronym: EcoLR33
Org_num: 72631
All begin VEE12_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 22640 | 63 aa hypothetical protein | |||
| 22650 | R | KquPF42ORF12975P (91% identity) | EcoLR33ORF22700P | |
| 22660 | 227 aa hypothetical protein | |||
| 22670 | S | S.EcoMB52ORF10865P (99% identity) | S.EcoLR33ORF22700P | |
| 22680 | transposase InsF for insertion sequence IS3E | |||
| 22690 | transposase InsE for insertion sequence IS3D | |||
| 22700 | M | M.Eco13216ORF5161P (97% identity) | M.EcoLR33ORF22700P | |
| 22710 | HTH-type transcriptional regulator | |||
| 38670 | 177 aa hypothetical protein | |||
| 38680 | M | M.SflSTLE3ORF19325P (100% identity) | AGCANNNNNNTGA | M.EcoLR33ORF38680P |
| 38690 | S | S.SflSTLE3ORF19325P (100% identity) | AGCANNNNNNTGA | S.EcoLR33ORF38680P |
| 38700 | R | SflSTLE3ORF19325P (100% identity) | AGCANNNNNNTGA | EcoLR33ORF38680P |
| 38710 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 890 | 281 aa hypothetical protein | |||
| ??? | M | M.EcoT654ORF450P (100% identity) | M.EcoLR33ORF900P | |
| 910 | 64 aa hypothetical protein | |||
| 4130 | cell division protein DamX | |||
| ??? | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoLR33DamP |
| 4150 | ribulose-phosphate 3-epimerase | |||
| 5290 | acrEF/envCD operon repressor | |||
| 5300 | M | M.Sso8ORF2545P (100% identity) | ATGCAT | M.EcoLR33ORF5300P |
| 5310 | DNA-binding protein Fis | |||
| 18400 | 231 aa hypothetical protein | |||
| 18410 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.EcoLR33DcmP |
| 18420 | V | V.SsoSE61DcmP (100% identity) | CCWGG | V.EcoLR33DcmP |
| 18430 | inner membrane transporter YedA | |||
| 29680 | replication endonuclease from | |||
| 29690 | M | M.EcoW26ORF33470P (100% identity) | GATC | M.EcoLR33ORF29690P |
| 29700 | 75 aa hypothetical protein | |||
| 35040 | 97 aa hypothetical protein | |||
| 35050 | M | M.Sso63633ORF22290P (57% identity) | M.EcoLR33ORF35050P | |
| 35060 | 72 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| plasmid pLR-33_1 | ||||
| 45200 | IS30 family transposase | |||
| 45210 | R | SspS13ORF650P (100% identity) | EcoLR33ORF45220P | |
| 45220 | M | M.SspS13ORF650P (100% identity) | M.EcoLR33ORF45220P | |
| 45230 | 67 aa hypothetical protein | |||