Escherichia coli 2018-11-1BCC |
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Putative Escherichia coli 2018-11-1BCC RM systems
Ref: Hoang,H.T.T. et al. unpublished
REBASE ref # 37785
| Sequence length: | GenBank #: | |
| Chromosome: | 4,552,125 bp | AP027902 |
| plasmid p2018-11-1BCC_1: | 120,822 bp | AP027903 |
| plasmid p2018-11-1BCC_2: | 114,243 bp | AP027904 |
REBASE acronym: EcoBCC
Org_num: 72613
All begin VEE49_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 33160 | transposase | |||
| ??? | S | S2.Eco46C16ORF14780P (65% identity) | S3.EcoBCCORF33230P | |
| 33180 | R | EcoNT1F31ORF7070P (93% identity) | EcoBCCORF33230P | |
| ??? | S | S2.EcoLR31ORF15520P (97% identity) | S2.EcoBCCORF33230P | |
| 33190 | transposase | |||
| 33200 | 115 aa hypothetical protein | |||
| 33210 | transposase | |||
| 33220 | IS5 family transposase | |||
| ??? | M | M.Eco244ORF19950P (100% identity) | M.EcoBCCORF33230P | |
| 33260 | S | S.EcoZ147ORF19115P (100% identity) | S1.EcoBCCORF33230P | |
| 33270 | 124 aa hypothetical protein | |||
| plasmid p2018-11-1BCC_1 | ||||
| 43190 | 44 aa hypothetical protein | |||
| 43200 | R | EcoC9108IP (100% identity) | CCANNNNNNNNTGAA | EcoBCCORF43220P |
| 43210 | S | S.EcoO111ORFAP (99% identity) | CCANNNNNNNNTGAA | S.EcoBCCORF43220P |
| 43220 | M | M.EcoC9108I (99% identity) | CCANNNNNNNNTGAA | M.EcoBCCORF43220P |
| 43230 | 73 aa hypothetical protein | |||
| plasmid p2018-11-1BCC_2 | ||||
| 44700 | 66 aa hypothetical protein | |||
| 44710 | M | M.EcoYJ4ORFEP (92% identity) | M.EcoBCCORF44710P | |
| 44720 | S | S.Eco380BORFEP (68% identity) | S.EcoBCCORF44710P | |
| 44730 | R | EcoPD4ORF23395P (99% identity) | EcoBCCORF44710P | |
| 44740 | 158 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3270 | cell division protein DamX | |||
| 3280 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoBCCDamP |
| 3290 | ribulose-phosphate 3-epimerase | |||
| 4410 | acrEF/envCD operon repressor | |||
| 4420 | M | M.Sso8ORF2545P (100% identity) | ATGCAT | M.EcoBCCORF4420P |
| 4430 | DNA-binding protein Fis | |||
| 30670 | protein ninX | |||
| 30680 | M | M.SflWW1ORF7070P (100% identity) | GATC | M.EcoBCCORF30680P |
| 30690 | protein ninB | |||
| 37000 | 9-O-acetyl-N-acetylneuraminic acid deacetylase | |||
| 37010 | R | EcoH40aORFEP (95% identity) | EcoBCCORF37010P | |
| 37020 | transposase | |||
| 37030 | repressor TnpA | |||
| 37040 | M | M.EcoPSS04ORF37360P (42% identity) | M.EcoBCCORF37040P | |
| 37050 | 947 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 24510 | 50 aa hypothetical protein | |||
| ??? | R | EcoPC1McrCP (100% identity) | EcoBCCMcrCP | |
| 24530 | R | EcoPC1McrBP (45% identity) | EcoBCCMcrBP | |
| 24540 | transposase | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| plasmid p2018-11-1BCC_2 | ||||
| 44820 | 76 aa hypothetical protein | |||
| 44830 | M | M.Sso524ORF460P (100% identity) | GATC | M.EcoBCCORF44830P |
| 44840 | 269 aa hypothetical protein | |||