Escherichia coli isolate F1140 |
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Putative Escherichia coli isolate F1140 RM systems
Ref: Leclercq,S. unpublished
REBASE ref # 37790
| Sequence length: | GenBank #: | |
| chromosome 1: | 4,983,040 bp | OY754377 |
| plasmid pF1140-1: | 204,501 bp | OY754378 |
| plasmid pF1140-2: | 134,861 bp | OY754379 |
REBASE acronym: EcoF1140
Org_num: 72674
All begin FGAF1140_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 38610 | 388 aa hypothetical protein | |||
| 38620 | M | M.EcosA4II (100% identity) | GATANNNNNNTCC | M.EcoF1140ORF38620P |
| 38630 | S | S.EcosA4II (100% identity) | GATANNNNNNTCC | S.EcoF1140ORF38620P |
| 38640 | R | EcosA4IIP (100% identity) | GATANNNNNNTCC | EcoF1140ORF38620P |
| 38650 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 3560 | cell division protein DamX | |||
| 3570 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoF1140DamP |
| 3580 | ribulose-phosphate 3-epimerase | |||
| 4580 | DUF2556 family protein | |||
| 4590 | M | M.Sdy12039ORFBP (100% identity) | ATGCAT | M.EcoF1140ORF4590P |
| 4600 | DNA-binding transcriptional regulator Fis | |||
| 18050 | phosphohydrolase | |||
| 18060 | M | M.EcosE1DcmP (100% identity) | CCWGG | M.EcoF1140DcmP |
| 18070 | V | V.EcosE1DcmP (74% identity) | V.EcoF1140DcmP | |
| 18080 | drug/metabolite exporter YedA | |||
| plasmid pF1140-1 | ||||
| 46580 | 55 aa hypothetical protein | |||
| 46590 | M | M.YpsF1ORFCP (100% identity) | CCWGG | M.EcoF1140ORF46590P |
| 46600 | thermonuclease family protein | |||
| 47440 | 48 aa hypothetical protein | |||
| 47450 | M | M.YpsF1ORFBP (100% identity) | M.EcoF1140ORF47450P | |
| 47460 | 202 aa hypothetical protein | |||
| 47680 | DNA-binding protein | |||
| 47690 | M | M.YpsF1ORFDP (95% identity) | M.EcoF1140ORF47690P | |
| 47700 | 283 aa hypothetical protein | |||
| plasmid pF1140-2 | ||||
| 49010 | 73 aa hypothetical protein | |||
| 49020 | M | M.Ecos69ORF26765P (100% identity) | M.EcoF1140ORF49020P | |
| 49030 | conserved protein of unknown function | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 38600 | BrnT family toxin | |||
| 38610 | R | EcoSTEFF1MrrP (100% identity) | EcoF1140MrrP | |
| 38620 | class I SAM-dependent DNA methyltransferase | |||