Dickeya solani CFBP5647 |
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Putative Dickeya solani CFBP5647 RM systems
Ref: Pedron,J. et al. unpublished
REBASE ref # 37643
Complete sequence: 5,248,586 bp
GenBank #: CP136339
REBASE acronym: Dso5647
Org_num: 72164
All begin RXA29_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 8125 | integrase arm-type DNA-binding domain-containing | |||
| 8130 | M | M.ParYKXORF1985P (97% identity) | M.Dso5647ORF8130P | |
| 8135 | S | S.Pre70ORFGP (58% identity) | S.Dso5647ORF8130P | |
| 8140 | R | Dso512AORFBP (99% identity) | Dso5647ORF8130P | |
| 8145 | RhuM family protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4010 | ribulose-phosphate 3-epimerase | |||
| 4015 | M | M.DsoMK16ORFEP (100% identity) | GATC | M.Dso5647DamP |
| 4020 | SPOR domain-containing protein | |||
| 8220 | LysE/ArgO family amino acid transporter | |||
| 8225 | V | V.DspMK7ORFAP (88% identity) | V.Dso5647ORF8230P | |
| 8230 | M | M.DfaZXC1ORF9345P (92% identity) | CCWGG | M.Dso5647ORF8230P |
| 8235 | R | Dsp2B12ORFDP (81% identity) | Dso5647ORF8230P | |
| 8240 | MFS transporter | |||
| 9130 | Dam family site-specific | |||
| 9135 | M | M1.BspK61ORFFP (91% identity) | M.Dso5647ORF9135P | |
| 9140 | phosphoadenosine phosphosulfate reductase family | |||
| 9145 | replication endonuclease | |||
| 9150 | M | M.Ddi6719ORF2950P (70% identity) | M.Dso5647ORF9150P | |
| 9155 | 52 aa hypothetical protein | |||
| 11185 | tyrosine-type recombinase/integrase | |||
| 11190 | M | M.PbaM84ORFBP (43% identity) | M.Dso5647ORF11190P | |
| 11195 | zinc ribbon domain-containing protein | |||
| 13970 | GTPase | |||
| 13975 | M | M.PpoPZ1ORF17185P (98% identity) | M.Dso5647ORF13975P | |
| 13980 | DNA topoisomerase III | |||
| 19545 | DUF3363 domain-containing protein | |||
| 19550 | M | M.DdaS31DndBP (100% identity) | M.Dso5647DndBP | |
| 19555 | DNA phosphorothioation system sulfurtransferase | |||
| 19550 | DNA sulfur modification protein DndB | |||
| 19555 | M | M.DdaS31DndCP (99% identity) | M.Dso5647DndCP | |
| 19560 | DNA sulfur modification protein DndD | |||
| 19555 | DNA phosphorothioation system sulfurtransferase | |||
| 19560 | M | M.DdaS31DndDP (98% identity) | M.Dso5647DndDP | |
| 19565 | DNA sulfur modification protein DndE | |||
| 19560 | DNA sulfur modification protein DndD | |||
| 19565 | M | M.DdaS31DndEP (99% identity) | M.Dso5647DndEP | |
| 19570 | class I SAM-dependent methyltransferase | |||
| 19575 | restriction endonuclease | |||
| 19580 | R | KmiTHO011DptHP (96% identity) | Dso5647DptHP | |
| 19585 | DNA phosphorothioation-dependent restriction | |||
| 19580 | DNA phosphorothioation-dependent restriction | |||
| 19585 | R | Ddi6719DptGP (100% identity) | Dso5647DptGP | |
| 19590 | DNA phosphorothioation-dependent restriction | |||
| 19585 | DNA phosphorothioation-dependent restriction | |||
| 19590 | R | Ddi6719DptFP (97% identity) | Dso5647DptFP | |
| 19595 | integrase | |||
| 19960 | MobC family replication-relaxation protein | |||
| 19965 | M | M.Cje12850ORF5108P (94% identity) | M.Dso5647ORF19965P | |
| 19970 | 402 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 19570 | class I SAM-dependent methyltransferase | |||
| 19575 | R | EcoMc31MrrP (95% identity) | Dso5647MrrP | |
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 9125 | 3-5 exonuclease | |||
| 9130 | M | M.Dso512AORFGP (92% identity) | M.Dso5647ORF9130P | |
| 9135 | DNA cytosine methyltransferase | |||