Escherichia coli TUM13064 |
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Putative Escherichia coli TUM13064 RM systems
Ref: Komori,K. et al. unpublished
REBASE ref # 37603
| Sequence length: | GenBank #: | |
| Chromosome: | 5,273,163 bp | CP135653 |
| plasmid pMTY13064_IncF: | 97,567 bp | CP135654 |
REBASE acronym: Eco3064
Org_num: 72053
All begin RS170_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3365 | endoribonuclease SymE | |||
| 3370 | R | Ecou021ORF19870P (100% identity) | RTACNNNNGTG | Eco3064ORF3380P |
| 3375 | S | S.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | S.Eco3064ORF3380P |
| 3380 | M | M.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | M.Eco3064ORF3380P |
| 3385 | restriction endonuclease | |||
| 5505 | ash family protein | |||
| 5510 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.Eco3064ORF5515P |
| 5515 | M | M.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | M.Eco3064ORF5515P |
| 5520 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | Eco3064ORF5515P |
| 5525 | type IV toxin-antitoxin system AbiEi family | |||
| plasmid pMTY13064_IncF | ||||
| 26625 | S-4TM family putative pore-forming effector | |||
| ??? | S | S2.Eco9512ORFCP (98% identity) | S1.Eco3064ORF26635P | |
| 26635 | M | M.EcoEC0899ORF26310P (100% identity) | M.Eco3064ORF26635P | |
| 26640 | type II toxin-antitoxin system Phd/YefM family | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2990 | helix-turn-helix domain-containing protein | |||
| 2995 | M | M1.EcosS9ORF2810P (100% identity) | GGTCTC | M1.Eco3064ORF2995P |
| 3000 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M2.Eco3064ORF2995P |
| 3005 | R | EcosS9ORF2810P (100% identity) | GGTCTC | Eco3064ORF2995P |
| 3010 | McrC family protein | |||
| 5240 | PerC family transcriptional regulator | |||
| 5245 | M | M.EcoEC0899ORF22010P (100% identity) | GATC | M.Eco3064ORF5245P |
| 5250 | LexA family transcriptional regulator | |||
| 5285 | 67 aa hypothetical protein | |||
| 5290 | M | M.Sso63633ORF22290P (96% identity) | M.Eco3064ORF5290P | |
| 5295 | transposase | |||
| 9020 | 71 aa hypothetical protein | |||
| 9025 | M | M.KpnYN1ORFGP (89% identity) | M.Eco3064ORF9025P | |
| 9030 | helix-turn-helix transcriptional regulator | |||
| 11290 | TrmB family transcriptional regulator | |||
| 11295 | M | M.EcosS9ORF10680P (100% identity) | A | M.Eco3064ORF11295P |
| 11310 | DUF3927 family protein | |||
| 14875 | drug/metabolite exporter YedA | |||
| 14880 | V | V.SflC32DcmP (74% identity) | CCWGG | V.Eco3064DcmP |
| 14885 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.Eco3064DcmP |
| 14890 | phosphohydrolase | |||
| 22630 | DNA-binding transcriptional regulator Fis | |||
| 22635 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.Eco3064ORF22635P |
| 22640 | DUF2556 family protein | |||
| 23230 | ribulose-phosphate 3-epimerase | |||
| 23235 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco3064DamP |
| 23240 | cell division protein DamX | |||
| plasmid pMTY13064_IncF | ||||
| 26565 | 73 aa hypothetical protein | |||
| 26570 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.Eco3064ORF26570P |
| 26575 | 103 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3005 | Alw26I/Eco31I/Esp3I family type II restriction | |||
| 3010 | R | EcosS9McrCP (100% identity) | Eco3064McrCP | |
| 3015 | R | EcosS3McrBP (100% identity) | Eco3064McrBP | |
| 3020 | IS3-like element ISEc52 family transposase | |||
| 3380 | class I SAM-dependent DNA methyltransferase | |||
| 3385 | R | Ecou021MrrP (100% identity) | Eco3064MrrP | |
| 3390 | BrnT family toxin | |||