Helicobacter pylori ICDC15003s |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Helicobacter pylori ICDC15003s RM systems
Ref: Gong,Y. unpublished
REBASE ref # 37509
Complete sequence: 1,595,738 bp
GenBank #: CP134397
REBASE acronym: Hpy3s
Org_num: 71642
All begin RJ558_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 375 | restriction endonuclease subunit S | |||
| 380 | M | M.Hpy382ORF385P (100% identity) | M.Hpy3sORF380P | |
| 385 | R | Hpy382ORF385P (100% identity) | Hpy3sORF380P | |
| 390 | S | S.Hpy382ORF385P (100% identity) | S.Hpy3sORF380P | |
| 395 | TonB-dependent receptor family protein | |||
| 2925 | 44 aa hypothetical protein | |||
| 2930 | S | S.Hpy382ORF2935P (100% identity) | S.Hpy3sORF2935P | |
| 2935 | M | M.Hpy382ORF2935P (100% identity) | M.Hpy3sORF2935P | |
| 2940 | R | Hpy381ORF2935P (99% identity) | Hpy3sORF2935P | |
| 2945 | motility associated factor glycosyltransferase | |||
| 4885 | hydroxyethylthiazole kinase | |||
| 4890 | R | Hpy382ORF4905P (100% identity) | CAANNNNNNNTTC | Hpy3sORF4900P |
| 4895 | S | S.Hpy382ORF4905P (100% identity) | CAANNNNNNNTTC | S.Hpy3sORF4900P |
| 4900 | M | M.Hpy382ORF4905P (100% identity) | CAANNNNNNNTTC | M.Hpy3sORF4900P |
| 4905 | phosphatase PAP2 family protein | |||
| 7550 | cag pathogenicity island protein | |||
| 7555 | S | S.Hpy382ORF7560P (100% identity) | TCTANNNNNNNTTG | S.Hpy3sORF7555P |
| 7560 | formyltetrahydrofolate deformylase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 50 | 713 aa hypothetical protein | |||
| 55 | RM | Hpy382ORF55P (100% identity) | Hpy3sORF55P | |
| 60 | 180 aa hypothetical protein | |||
| 275 | ComF family protein | |||
| 280 | RM | Hpy382ORF280P (100% identity) | CYANNNNNNNTRG | Hpy3sORF280P |
| 285 | S | S.HpyNCI56ORFD1P (96% identity) | S.Hpy3sORF280P | |
| 290 | DNA polymerase I | |||
| 460 | 67 aa hypothetical protein | |||
| 465 | M | M.Hpy382ORF470P (100% identity) | M.Hpy3sORF465P | |
| 470 | R | Hpy382ORF470P (100% identity) | Hpy3sORF465P | |
| 475 | cytochrome c1 | |||
| 1205 | HTH domain-containing protein | |||
| 1210 | M | M.Hpy382ORF1210P (100% identity) | GATC | M.Hpy3sORF1210P |
| 1215 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 2040 | exodeoxyribonuclease VII large subunit | |||
| 2045 | M | M.Hpy382ORF2045P (100% identity) | TCGA | M.Hpy3sORF2045P |
| 2050 | 204 aa hypothetical protein | |||
| 2050 | 204 aa hypothetical protein | |||
| 2055 | R | Hpy382ORF2060P (100% identity) | CCGG | Hpy3sORF2060P |
| 2060 | M | M.Hpyfe75ORF5835P (100% identity) | CCGG | M.Hpy3sORF2060P |
| 2065 | AAA family ATPase | |||
| 2480 | translation elongation factor 4 | |||
| 2485 | M | M.Hpy382ORF2485P (100% identity) | GCNGC | M.Hpy3sORF2485P |
| 2490 | group I intron-associated PD-(D/E)XK | |||
| 3015 | Hop family outer membrane protein HopJ/HopK | |||
| 3020 | M | M.Hpy382ORF3025P (100% identity) | ATTAAT | M.Hpy3sORF3020P |
| 3025 | glycosyltransferase family 9 protein | |||
| 3030 | translational GTPase TypA | |||
| 3035 | M | M.Hpy382ORF3040P (100% identity) | ACNGT | M.Hpy3sORF3035P |
| 3040 | R | Hpy382ORF3040P (100% identity) | ACNGT | Hpy3sORF3035P |
| 3045 | DNA cytosine methyltransferase | |||
| 3135 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 3140 | M | M.Hpy382ORF3145P (100% identity) | GTAC | M.Hpy3sORF3140P |
| 3145 | R | Hpy382ORF3145P (100% identity) | GTAC | Hpy3sORF3140P |
| 3150 | peptidoglycan DD-metalloendopeptidase Csd1 | |||
| 4020 | (Fe-S)-binding protein | |||
| 4025 | RM | Hpy382ORF4030P (100% identity) | Hpy3sORF4025P | |
| 4030 | 65 aa hypothetical protein | |||
| 5165 | flagellar hook protein FlgE | |||
| 5170 | R | Hpy382ORF5180P (100% identity) | GTNNAC | Hpy3sORF5175P |
| 5175 | M | M.Hpy382ORF5180P (100% identity) | GTNNAC | M.Hpy3sORF5175P |
| 5180 | ATP-dependent helicase | |||
| 5850 | acetyl-CoA carboxylase biotin carboxylase | |||
| 5855 | M | M.Hpy382ORF5860P (100% identity) | TCNNGA | M.Hpy3sORF5855P |
| 5860 | R | Hpy382ORF5860P (100% identity) | TCNNGA | Hpy3sORF5855P |
| 5865 | Laminin subunit alpha-2 precursor | |||
| 6050 | 144 aa hypothetical protein | |||
| 6055 | M | M.Hpy382ORF6060P (100% identity) | GCGC | M.Hpy3sORF6055P |
| 6060 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 6500 | HAD family hydrolase | |||
| 6505 | M | M.Hpy382ORF6510P (100% identity) | CATG | M.Hpy3sORF6505P |
| 6510 | R | Hpy382ORF6510P (100% identity) | CATG | Hpy3sORF6505P |
| 6515 | serine O-acetyltransferase | |||
| 7235 | DNA methyltransferase | |||
| ??? | R | Hpy382ORF7260P (100% identity) | Hpy3sORF7255P | |
| 7250 | 56 aa hypothetical protein | |||
| 7255 | M | M.Hpy382ORF7260P (100% identity) | M.Hpy3sORF7255P | |
| 7260 | type ISP restriction/modification enzyme | |||
| 7255 | site-specific DNA-methyltransferase | |||
| ??? | RM | Hpy3502ORF7265P (100% identity) | Hpy3sORF7260P | |
| 7270 | carboxylating nicotinate-nucleotide | |||
| 7320 | copper response regulator transcription factor | |||
| 7325 | R | Hpy382ORF7335P (100% identity) | GAAGA | Hpy3sORF7330P |
| 7330 | M | M1.Hpy382ORF7335P (100% identity) | GAAGA | M1.Hpy3sORF7330P |
| 7335 | M | M2.Hpyfe72ORF7010P (100% identity) | GAAGA | M2.Hpy3sORF7330P |
| 7340 | restriction endonuclease subunit R | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| 40 | M | M.Hpy3502ORF40P (99% identity) | GACC | M.Hpy3sORF40P |
| 45 | R | Hpy382ORF40P (100% identity) | GACC | Hpy3sORF40P |
| 50 | 713 aa hypothetical protein | |||
| 7400 | DNA/RNA non-specific endonuclease | |||
| 7405 | M | M.Hpy382ORF7410P (100% identity) | M.Hpy3sORF7405P | |
| 7410 | R | Hpy382ORF7410P (100% identity) | Hpy3sORF7405P | |
| 7415 | biotin synthase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3330 | type I glutamate--ammonia ligase | |||
| 3335 | R | Hpy382GmrSD2P (100% identity) | Hpy3sGmrSD2P | |
| 3340 | 50S ribosomal protein L9 | |||
| 3825 | tetratricopeptide repeat protein | |||
| 3830 | R | Hpy382GmrSDP (100% identity) | Hpy3sGmrSDP | |
| 3835 | NAD(P)H-dependent oxidoreductase | |||