Escherichia fergusonii 22C056LT |
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Putative Escherichia fergusonii 22C056LT RM systems
Ref: Kakita,T. et al. unpublished
REBASE ref # 37455
| Sequence length: | GenBank #: | |
| Chromosome: | 4,537,732 bp | AP028847 |
| plasmid p22C056LT2: | 122,823 bp | AP028849 |
| plasmid p22C056LT3: | 95,446 bp | AP028850 |
REBASE acronym: Efe56LT
Org_num: 71420
All begin Ef22C056LT_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 32770 | 48 aa hypothetical protein | |||
| 32780 | S | S.SflN101ORF19075P (100% identity) | GAACNNNNNTGC | S.Efe56LTORF32790P |
| 32790 | M | M.Sen6640ORF2690P (100% identity) | GAACNNNNNTGC | M.Efe56LTORF32790P |
| 32800 | R | EmaC12ORF18910P (100% identity) | GAACNNNNNTGC | Efe56LTORF32790P |
| 32810 | 74 aa hypothetical protein | |||
| 35010 | 119 aa hypothetical protein | |||
| 35020 | R | Efe9LTORF34980P (100% identity) | Efe56LTORF35030P | |
| 35030 | M | M.SflTORF4636P (98% identity) | M.Efe56LTORF35030P | |
| 35040 | S | S.Efe9LTORF34980P (100% identity) | S.Efe56LTORF35030P | |
| 35050 | endoribonuclease SymE | |||
| plasmid p22C056LT2 | ||||
| 44070 | 75 aa hypothetical protein | |||
| 44080 | M | M.Efe7LTORF43470P (100% identity) | GAGNNNNNRTGA | M.Efe56LTORF44080P |
| 44090 | S | S.Efe9LTORF43980P (100% identity) | GAGNNNNNRTGA | S.Efe56LTORF44080P |
| 44100 | R | Efe9LTORF43980P (100% identity) | GAGNNNNNRTGA | Efe56LTORF44080P |
| 44110 | 168 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2240 | bifunctional isocitrate dehydrogenase | |||
| 2250 | M | M.EfeTORF2210P (100% identity) | CCWGG | M.Efe56LTORF2250P |
| 2260 | glyoxylate bypass operon transcriptional | |||
| 25380 | protein NinF | |||
| 25390 | M | M.SflWW1ORF7070P (100% identity) | GATC | M.Efe56LTORF25390P |
| 25400 | 200 aa hypothetical protein | |||
| 35200 | anti-phage ZorAB system protein ZorA | |||
| 35210 | M | M.Efe9LTDndBP (100% identity) | M.Efe56LTDndBP | |
| 35220 | DNA phosphorothioation system sulfurtransferase | |||
| 35210 | DNA sulfur modification protein DndB | |||
| 35220 | M | M.Efe9LTDndCP (100% identity) | M.Efe56LTDndCP | |
| 35230 | DNA sulfur modification protein DndD | |||
| 35220 | DNA phosphorothioation system sulfurtransferase | |||
| 35230 | M | M.Efe9LTDndDP (100% identity) | M.Efe56LTDndDP | |
| 35240 | 117 aa hypothetical protein | |||
| 35230 | DNA sulfur modification protein DndD | |||
| 35240 | M | M.Efe9LTDndEP (100% identity) | M.Efe56LTDndEP | |
| 35250 | DGQHR domain-containing protein | |||
| 35260 | 174 aa hypothetical protein | |||
| 35270 | R | Efe9LTDptHP (100% identity) | Efe56LTDptHP | |
| 35280 | 440 aa hypothetical protein | |||
| 35270 | 1695 aa hypothetical protein | |||
| 35280 | R | Efe9LTDptGP (100% identity) | Efe56LTDptGP | |
| 35290 | 549 aa hypothetical protein | |||
| 35280 | 440 aa hypothetical protein | |||
| 35290 | R | Efe9LTDptFP (100% identity) | Efe56LTDptFP | |
| 35300 | integrase arm-type DNA-binding domain-containing | |||
| 36560 | DNA-binding transcriptional regulator Fis | |||
| 36570 | M | M.EfeTORF37040P (100% identity) | ATGCAT | M.Efe56LTORF36570P |
| 36580 | DUF2556 family protein | |||
| 37550 | ribulose-phosphate 3-epimerase | |||
| 37560 | M | M.EfeEF04DamP (100% identity) | GATC | M.Efe56LTDamP |
| 37570 | cell division protein DamX | |||
| plasmid p22C056LT2 | ||||
| 44290 | 63 aa hypothetical protein | |||
| 44300 | M | M.Efe9LTORF44210P (100% identity) | M.Efe56LTORF44300P | |
| 44310 | recombination-associated protein RdgC | |||
| plasmid p22C056LT3 | ||||
| 44790 | DUF1281 domain-containing protein | |||
| 44800 | M | M.SspPIBORF23080P (100% identity) | M.Efe56LTORF44800P | |
| 44810 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 35050 | endoribonuclease SymE | |||
| 35060 | R | Efe9LTGmrSDP (100% identity) | Efe56LTGmrSDP | |
| 35070 | DUF1127 domain-containing protein | |||
| 35120 | DUF445 domain-containing protein | |||
| 35140 | R | Efe9LTMrrP (100% identity) | Efe56LTMrrP | |
| 35150 | 228 aa hypothetical protein | |||