Escherichia coli O157:H7 MD2019EC2705C4 |
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Putative Escherichia coli O157:H7 MD2019EC2705C4 RM systems
Ref: Hoffmann,M. et al. unpublished
REBASE ref # 37411
| Sequence length: | GenBank #: | |
| Chromosome: | 5,449,227 bp | CP101522 |
| plasmid pCFSAN101716: | 92,997 bp | CP101523 |
REBASE acronym: Eco5C4
Org_num: 71258
All begin GL980_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 23985 | DUF262 domain-containing protein | |||
| 23990 | R | Ecos1613ORF27060P (100% identity) | CACNNNNNNNCTGG | Eco5C4ORF23995P |
| 23995 | M | M.Eco864ORF24060P (100% identity) | CACNNNNNNNCTGG | M.Eco5C4ORF23995P |
| 24000 | S | S.EcosPA8ORF17615P (100% identity) | CACNNNNNNNCTGG | S.Eco5C4ORF23995P |
| 24005 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2310 | cell division protein DamX | |||
| 2315 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco5C4DamP |
| 2320 | ribulose-phosphate 3-epimerase | |||
| 2825 | DUF2556 family protein | |||
| 2830 | M | M.EcosPA8ORF11510P (100% identity) | ATGCAT | M.Eco5C4ORF2830P |
| 2835 | DNA-binding transcriptional regulator Fis | |||
| 9775 | phosphohydrolase | |||
| 9780 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.Eco5C4DcmP |
| 9785 | V | V.EcosPA8DcmP (100% identity) | CCWGG | V.Eco5C4DcmP |
| 9790 | drug/metabolite exporter YedA | |||
| 12915 | 35 aa hypothetical protein | |||
| 12920 | M | M.Ecos15739ORF2910P (100% identity) | M.Eco5C4ORF12920P | |
| 12925 | 329 aa hypothetical protein | |||
| 12930 | R | Ecos15739ORF2910P (100% identity) | Eco5C4ORF12920P | |
| 12935 | DUF1367 family protein | |||
| 14475 | DUF1737 domain-containing protein | |||
| 14490 | M | M.EcosPA8ORF27255P (100% identity) | M.Eco5C4ORF14490P | |
| 14495 | TrmB family transcriptional regulator | |||
| 17355 | phage antirepressor Ant | |||
| ??? | M | M.EcoX21ORFCP (100% identity) | GATC | M.Eco5C4ORF17360P |
| 17370 | recombination protein NinB | |||
| 24225 | RM | EcosPA8ORF17390P (100% identity) | GAAABCC | Eco5C4ORF24225P |
| 24230 | DEAD/DEAH box helicase | |||
| plasmid pCFSAN101716 | ||||
| 27320 | 73 aa hypothetical protein | |||
| 27325 | M | M.EcosPA8ORF27775P (100% identity) | M.Eco5C4ORF27325P | |
| 27330 | 101 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 24005 | endoribonuclease SymE | |||
| 24010 | R | EcosPA8GmrSDP (55% identity) | Eco5C4GmrDP | |
| 24015 | R | Ecos1613GmrSP (100% identity) | Eco5C4GmrSP | |
| 24020 | cytoplasmic protein | |||