Helicobacter pylori DU1838C |
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Putative Helicobacter pylori DU1838C RM systems
Ref: Yoshida,S. et al. unpublished
REBASE ref # 37604
Complete sequence: 1,589,604 bp
GenBank #: AP028732
REBASE acronym: Hpy1838C
Org_num: 72074
All begin HpyDU1838_
| Type II | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 570 | 72 aa hypothetical protein | |||
| 580 | M | M.Hpyfe81ORF965P (98% identity) | GATC | M.Hpy1838CIX |
| 590 | R | HpyP96ORFIP (97% identity) | GATC | Hpy1838CIXP |
| 600 | S41 family peptidase | |||
| 2010 | 120 aa hypothetical protein | |||
| 2020 | M | M.HpyJ021I (100% identity) | CATG | M.Hpy1838CI |
| 2030 | 66 aa hypothetical protein | |||
| 2920 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 2930 | M | M.HpyMKF3ORF1086P (99% identity) | GCGC | M.Hpy1838CORF2930P |
| 2940 | 144 aa hypothetical protein | |||
| 3320 | 214 aa hypothetical protein | |||
| 3330 | R | Hpy30VIP (99% identity) | TGCA | Hpy1838CXIP |
| 3340 | M | M.HpySG02XIII (99% identity) | TGCA | M.Hpy1838CXI |
| 3350 | acetyl-CoA carboxylase biotin carboxylase | |||
| 4790 | ATP-dependent helicase | |||
| ??? | M | M.Hpyfe80ORF2710P (95% identity) | GTNNAC | M.Hpy1838CORF4800P |
| 4810 | R | HpyR04XP (85% identity) | GTNNAC | Hpy1838CORF4800P |
| 4820 | flagellar hook protein FlgE | |||
| 7270 | 205 aa hypothetical protein | |||
| 7280 | RM | HpyF210ORF741P (64% identity) | Hpy1838CORF7280P | |
| 7290 | outer membrane protein | |||
| 10760 | 115 aa hypothetical protein | |||
| 10770 | M | M.Hpyoh1ORF4535P (22% identity) | M.Hpy1838CORF10770BP | |
| 10780 | M | M.HpyH016ORF1755P (70% identity) | M.Hpy1838CORF10770AP | |
| 10790 | translation elongation factor 4 | |||
| 11170 | 122 aa hypothetical protein | |||
| 11180 | M | M.Hpyfe64ORF7055P (100% identity) | GANTC | M.Hpy1838CVIII |
| 11190 | R | HpyM6CORFEP (98% identity) | GANTC | Hpy1838CVIIIP |
| 11200 | polysaccharide deacetylase | |||
| 11170 | 122 aa hypothetical protein | |||
| 11180 | M | M.HpyPU006VI (99% identity) | CTNAG | M.Hpy1838CVII |
| 11190 | R | HpySG07VIIP (98% identity) | CTNAG | Hpy1838CVIIP |
| 11200 | polysaccharide deacetylase | |||
| 11800 | 349 aa hypothetical protein | |||
| 11810 | M | M.HpyUM077ORF765P (100% identity) | CCGG | M.Hpy1838CVI |
| ??? | R | HpyML3ORFOP (94% identity) | CCGG | Hpy1838CVIP |
| 11840 | 51 aa hypothetical protein | |||
| 11850 | 204 aa hypothetical protein | |||
| ??? | M | M.Hpy38ORF300P (98% identity) | TCGA | M.Hpy1838CORF11860P |
| 11880 | exodeoxyribonuclease VII large subunit | |||
| 13360 | ACP S-malonyltransferase | |||
| ??? | R | Hpy238ORF5250P (100% identity) | TCNNGA | Hpy1838CXP |
| 13380 | M | M.HpyK051X (99% identity) | TCNNGA | M.Hpy1838CX |
| 13390 | 146 aa hypothetical protein | |||
| 14850 | glycosyltransferase family 8 protein | |||
| 14860 | R | Hpy70ORF1374P (99% identity) | Hpy1838CORF14870P | |
| 14870 | M | M.HpyF225ORFB1P (100% identity) | M.Hpy1838CORF14870P | |
| 14880 | 49 aa hypothetical protein | |||
| 15480 | 105 aa hypothetical protein | |||
| 15490 | S | S.Hpybs3ORFA1P (97% identity) | S.Hpy1838CORF15500P | |
| 15500 | RM | Hpy5ORF550P (98% identity) | CYANNNNNNTGA | Hpy1838CORF15500P |
| 15510 | ComF family protein | |||
| 16000 | transcription termination factor NusA | |||
| 16010 | RM | HpyP96ORFBP (94% identity) | Hpy1838CORF16010P | |
| 16020 | type III restriction-modification system | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 390 | rod shape-determining protein MreC | |||
| 400 | R | HpyJ029ORF200P (95% identity) | CTGA | Hpy1838CORF410P |
| 410 | M | M.Hpyfe80ORF6895P (96% identity) | CTGA | M.Hpy1838CORF410P |
| 420 | copper response regulator transcription factor | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 9240 | 50S ribosomal protein L9 | |||
| 9250 | R | HpyJ029GmrSDP (92% identity) | Hpy1838CGmrSD2P | |
| 9260 | type I glutamate--ammonia ligase | |||