Helicobacter pylori AMI |
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Putative Helicobacter pylori AMI RM systems
Ref: Yoshida,S. et al. unpublished
REBASE ref # 37604
Complete sequence: 1,597,230 bp
GenBank #: AP028726
REBASE acronym: HpyAM
Org_num: 72073
All begin HpyAMI_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4970 | RNA degradosome polyphosphate kinase | |||
| 4980 | S | S.Hpyoh1ORF4975P (100% identity) | CAGNNNNNTC | S.HpyAMORF4990P |
| 4990 | M | M.Hpyoh1ORF4975P (31% identity) | CAGNNNNNTC | M.HpyAMORF4990BP |
| 5000 | M | M.Hpyoh1ORF4975P (68% identity) | CAGNNNNNTC | M.HpyAMORF4990AP |
| 5010 | R | HpyMSS1ORF1006P (100% identity) | CAGNNNNNTC | HpyAMORF4990P |
| 5020 | motility associated factor glycosyltransferase | |||
| 6320 | 258 aa hypothetical protein | |||
| 6330 | S | S.Hpyoh1ORF5590P (100% identity) | GRTANNNNNNNTG | S.HpyAMORF6330P |
| 6340 | outer membrane beta-barrel protein HofF | |||
| 15610 | 72 aa hypothetical protein | |||
| 15620 | S | S.Hpyoh1ORF1965P (88% identity) | S.HpyAMORF15620P | |
| 15630 | formyltetrahydrofolate deformylase | |||
| 16790 | 140 aa hypothetical protein | |||
| 16800 | S | S.Hpyoh1ORF5590P (58% identity) | S2.HpyAMORF16820P | |
| 16810 | S | S.Hpyoh1ORF2485P (37% identity) | S1.HpyAMORF16820P | |
| 16820 | M | M.Hpyoh1ORF2485P (52% identity) | M4.HpyAMORF16820P | |
| 16830 | M | M.HpySWT02ORF7140P (7% identity) | M3.HpyAMORF16820P | |
| 16840 | M | M.Hpy334ORFFAP (42% identity) | M2.HpyAMORF16820P | |
| 16850 | M | M.Hpyoh1ORF2485P (20% identity) | M1.HpyAMORF16820P | |
| 16860 | R | Hpyoh1ORF2485P (19% identity) | HpyAMORF16820AP | |
| 16870 | R | Hpyoh1ORF2485P (78% identity) | HpyAMORF16820BP | |
| 16880 | SprT family zinc-dependent metalloprotease | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 990 | ACP S-malonyltransferase | |||
| 1000 | R | Hpyoh1ORF3300P (100% identity) | GATC | HpyAMORF1010P |
| 1010 | M | M.Hpyoh1ORF3300P (100% identity) | GATC | M.HpyAMORF1010P |
| 1020 | 146 aa hypothetical protein | |||
| 2860 | 212 aa hypothetical protein | |||
| 2870 | M | M1.HpySS1DORF249P (100% identity) | TCGA | M.HpyAMORF2870P |
| 2880 | 204 aa hypothetical protein | |||
| 2880 | 204 aa hypothetical protein | |||
| ??? | R | Hpyoh1ORF4130P (100% identity) | CCGG | HpyAMORF2910P |
| ??? | M | M.Hpyoh1ORF4130P (100% identity) | CCGG | M.HpyAMORF2910P |
| 2930 | 300 aa hypothetical protein | |||
| 3940 | translation elongation factor 4 | |||
| 3950 | M | M.Hpyoh1ORF4535P (100% identity) | GCNGC | M.HpyAMORF3950P |
| 3960 | 66 aa hypothetical protein | |||
| 5140 | Hop family outer membrane protein HopJ/HopK | |||
| 5150 | M | M.Hpyoh1ORF5060P (100% identity) | ATTAAT | M.HpyAMORF5150P |
| 5160 | glycosyltransferase family 9 protein | |||
| 5180 | translational GTPase TypA | |||
| 5190 | M | M.Hpyoh1ORF5075P (100% identity) | ACNGT | M.HpyAMORF5190P |
| 5200 | R | Hpyoh1ORF5075P (100% identity) | ACNGT | HpyAMORF5190P |
| 5210 | DNA cytosine methyltransferase | |||
| 5200 | 204 aa hypothetical protein | |||
| 5210 | M | M.Hpyoh1ORF5085P (100% identity) | ACGT | M.HpyAMORF5210P |
| 5220 | R | Hpyoh1ORF5085P (100% identity) | ACGT | HpyAMORF5210P |
| 5230 | catalase | |||
| 5570 | phosphatase PAP2 family protein | |||
| 5580 | R | Hpyoh1ORF5265P (100% identity) | GGCC | HpyAMORF5590P |
| 5590 | M | M.Hpyoh1ORF5265P (100% identity) | GGCC | M.HpyAMORF5590P |
| 5600 | 273 aa hypothetical protein | |||
| 7520 | ATP-dependent helicase | |||
| 7530 | M | M.Hpyoh1ORF6110P (100% identity) | GTNNAC | M.HpyAMORF7530P |
| 7540 | R | Hpyoh1ORF6110P (100% identity) | GTNNAC | HpyAMORF7530P |
| 7550 | 171 aa hypothetical protein | |||
| 8070 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| ??? | M | M.HpySS1DORF695P (100% identity) | GTAC | M.HpyAMORF8080P |
| 8100 | R | HpySS1DORF695P (95% identity) | GTAC | HpyAMORF8080P |
| 8110 | peptidoglycan DD-metalloendopeptidase Csd1 | |||
| 10030 | 69 aa hypothetical protein | |||
| 10040 | RM | Hpyoh1ORF7185P (10% identity) | HpyAMORF10040AP | |
| 10050 | RM | HpySS1DORF875AP (73% identity) | HpyAMORF10040BP | |
| 10060 | RM | Hpyoh1ORF7185P (51% identity) | HpyAMORF10040CP | |
| 10070 | 85 aa hypothetical protein | |||
| 11810 | 163 aa hypothetical protein | |||
| 11820 | M | M.Hpyoh1ORF6430P (100% identity) | TCNNGA | M.HpyAMORF11820P |
| 11830 | R | Hpyoh1ORF6430P (100% identity) | TCNNGA | HpyAMORF11820P |
| 11840 | 197 aa hypothetical protein | |||
| 12260 | 144 aa hypothetical protein | |||
| 12270 | R | Hpyoh1ORF495P (100% identity) | GCGC | HpyAMORF12280P |
| 12280 | M | M.Hpyoh1ORF495P (100% identity) | GCGC | M.HpyAMORF12280P |
| 12290 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 13270 | HAD family hydrolase | |||
| ??? | M | M.Hpyoh1ORF955P (100% identity) | CATG | M.HpyAMORF13280P |
| 13300 | 94 aa hypothetical protein | |||
| 14940 | S41 family peptidase | |||
| 14950 | R | Hpyoh1ORF1670P (100% identity) | GANTC | HpyAMORF14960P |
| 14960 | M | M.Hpyoh1ORF1670P (100% identity) | GANTC | M.HpyAMORF14960P |
| 14970 | 180 aa hypothetical protein | |||
| 14960 | site-specific DNA-methyltransferase | |||
| ??? | RM | Hpyoh1ORF1675P (93% identity) | HpyAMORF14970P | |
| 14990 | carboxylating nicotinate-nucleotide | |||
| 16030 | 218 aa hypothetical protein | |||
| 16040 | S | S.Hpyoh1ORF2165P (100% identity) | S.HpyAMORF16050P | |
| 16050 | RM | Hpyoh1ORF2165P (100% identity) | CYANNNNNNNTGA | HpyAMORF16050P |
| 16060 | ComF family protein | |||
| 16370 | LptF/LptG family permease | |||
| 16380 | M | M1.Hpyoh1ORF2300P (100% identity) | CCATC | M1.HpyAMORF16380P |
| 16390 | M | M2.Hpyoh1ORF2300P (100% identity) | CCATC | M2.HpyAMORF16380P |
| 16400 | R | Hpyoh1ORF2300P (100% identity) | CCATC | HpyAMORF16380P |
| 16410 | outer membrane protein | |||
| 16590 | 179 aa hypothetical protein | |||
| 16600 | RM | Hpyoh1ORF2400P (66% identity) | HpyAMORF16600BP | |
| 16610 | RM | Hpyoh1ORF2400P (30% identity) | HpyAMORF16600AP | |
| 16620 | 714 aa hypothetical protein | |||
| 17040 | 67 aa hypothetical protein | |||
| 17050 | M | M.Hpyoh1ORF2575P (100% identity) | TGCA | M.HpyAMORF17050P |
| ??? | R | Hpyoh1ORF2575P (100% identity) | TGCA | HpyAMORF17050P |
| 17070 | cytochrome c1 | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 15090 | copper response regulator transcription factor | |||
| ??? | M | M.Hpyoh1ORF1735P (100% identity) | M.HpyAMORF15100P | |
| 15120 | R | Hpyoh1ORF1735P (99% identity) | HpyAMORF15100P | |
| 15130 | rod shape-determining protein MreC | |||
| 15250 | DNA/RNA non-specific endonuclease | |||
| ??? | M | M.Hpyoh1ORF1800P (100% identity) | M.HpyAMORF15260P | |
| ??? | R | HpySS1DORF1326P (100% identity) | HpyAMORF15260P | |
| 15300 | biotin synthase | |||
| 16620 | 714 aa hypothetical protein | |||
| ??? | R | Hpyoh1ORF2415P (100% identity) | HpyAMORF16660P | |
| ??? | M | M.Hpyoh1ORF2415P (100% identity) | M.HpyAMORF16660P | |
| 16680 | ATP-dependent DNA helicase RecG | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 9540 | 181 aa hypothetical protein | |||
| 9550 | R | Hpyoh1GmrSDP (100% identity) | HpyAMGmrSD2P | |
| 9560 | NAD(P)H-dependent oxidoreductase | |||