Escherichia coli R10 |
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Putative Escherichia coli R10 RM systems
Ref: Jaen-Luchoro,D. et al. Microorganisms 11 (7), 1622 (2023)
REBASE ref # 37298
| Sequence length: | GenBank #: | |
| Chromosome: | 5,128,182 bp | CP107162 |
| plasmid pR10-S4K79: | 138,672 bp | CP107163 |
REBASE acronym: EcosR10
Org_num: 69859
All begin OGM39_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3160 | endoribonuclease SymE | |||
| 3165 | R | Ecou021ORF19870P (100% identity) | RTACNNNNGTG | EcosR10ORF3175P |
| 3170 | S | S.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | S.EcosR10ORF3175P |
| 3175 | M | M.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | M.EcosR10ORF3175P |
| 3180 | restriction endonuclease | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2815 | helix-turn-helix domain-containing protein | |||
| 2820 | M | M1.EcosS9ORF2810P (100% identity) | GGTCTC | M1.EcosR10ORF2820P |
| 2825 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M2.EcosR10ORF2820P |
| 2830 | R | EcosS9ORF2810P (100% identity) | GGTCTC | EcosR10ORF2820P |
| 2835 | McrC family protein | |||
| 8480 | 134 aa hypothetical protein | |||
| 8485 | M | M.KpnYN1ORFGP (89% identity) | M.EcosR10ORF8485P | |
| 8490 | helix-turn-helix domain-containing protein | |||
| 10740 | TrmB family transcriptional regulator | |||
| 10745 | M | M.EcosS9ORF10680P (100% identity) | A | M.EcosR10ORF10745P |
| 10760 | DUF3927 family protein | |||
| 14320 | drug/metabolite exporter YedA | |||
| 14325 | V | V.SflC32DcmP (74% identity) | CCWGG | V.EcosR10DcmP |
| 14330 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.EcosR10DcmP |
| 14335 | phosphohydrolase | |||
| 17720 | 121 aa hypothetical protein | |||
| 17725 | R | Sso8033ORF3755P (100% identity) | CCWGG | EcosR10ORF17730P |
| 17730 | M | M.Sso8033ORF3755P (100% identity) | CCWGG | M.EcosR10ORF17730P |
| 17735 | 257 aa hypothetical protein | |||
| 17860 | phage lysis protein EssD | |||
| 17865 | M | M.EcosR6ORF7985P (100% identity) | M.EcosR10ORF17865P | |
| 17870 | 95 aa hypothetical protein | |||
| 17905 | LexA family transcriptional regulator | |||
| 17910 | M | M.SflLIN17ORF17440P (100% identity) | GATC | M.EcosR10ORF17910P |
| 17915 | PerC family transcriptional regulator | |||
| 21705 | DNA-binding transcriptional regulator Fis | |||
| 21710 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcosR10ORF21710P |
| 21715 | DUF2556 family protein | |||
| 22305 | ribulose-phosphate 3-epimerase | |||
| 22310 | M | M.SspPIBDamP (100% identity) | GATC | M.EcosR10DamP |
| 22315 | cell division protein DamX | |||
| plasmid pR10-S4K79 | ||||
| 25870 | 73 aa hypothetical protein | |||
| 25875 | M | M.KpnVA569ORF28145P (100% identity) | M.EcosR10ORF25875P | |
| 25880 | 103 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2830 | Alw26I/Eco31I/Esp3I family type II restriction | |||
| 2835 | R | EcosS9McrCP (100% identity) | EcosR10McrCP | |
| 2840 | R | EcosS3McrBP (100% identity) | EcosR10McrBP | |
| 2845 | glycosyltransferase | |||
| 3175 | type I restriction-modification system subunit | |||
| 3180 | R | Ecou021MrrP (100% identity) | EcosR10MrrP | |
| 3185 | BrnT family toxin | |||