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Putative Escherichia coli R2 RM systems
Ref: Jaen-Luchoro,D. et al. Microorganisms 11 (7), 1622 (2023)
REBASE ref # 37298
Sequence length: | GenBank #: | |
Chromosome: | 5,095,314 bp | CP107188 |
plasmid pR2-1030-1: | 162,472 bp | CP107189 |
REBASE acronym: Eco2
Org_num: 69864
All begin OGM32_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
Chromosome | ||||
11825 | TniQ family protein | |||
11830 | M | M.Sma1978ORFBP (100% identity) | ACGNNNNNGTTG | M.Eco2ORF11830P |
11835 | AAA family ATPase | |||
11840 | S | S.Sma1978ORFBP (100% identity) | ACGNNNNNGTTG | S.Eco2ORF11830P |
11845 | DNA binding domain-containing protein | |||
11850 | histidinol-phosphatase | |||
11855 | R | Sma1978ORFBP (100% identity) | ACGNNNNNGTTG | Eco2ORF11830P |
11860 | helix-turn-helix domain-containing protein | |||
17200 | endoribonuclease SymE | |||
17205 | R | Ecou021ORF19870P (100% identity) | RTACNNNNGTG | Eco2ORF17215P |
17210 | S | S.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | S.Eco2ORF17215P |
17215 | M | M.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | M.Eco2ORF17215P |
17220 | restriction endonuclease | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
Chromosome | ||||
3460 | drug/metabolite exporter YedA | |||
3465 | V | V.SflC32DcmP (74% identity) | CCWGG | V.Eco2DcmP |
3470 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.Eco2DcmP |
3475 | phosphohydrolase | |||
10675 | DNA-binding transcriptional regulator Fis | |||
10680 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.Eco2ORF10680P |
10685 | DUF2556 family protein | |||
11275 | ribulose-phosphate 3-epimerase | |||
11280 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco2DamP |
11285 | cell division protein DamX | |||
16855 | helix-turn-helix domain-containing protein | |||
16860 | M | M1.EcosS9ORF2810P (100% identity) | GGTCTC | M1.Eco2ORF16860P |
16865 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M2.Eco2ORF16860P |
16870 | R | EcosS9ORF2810P (99% identity) | GGTCTC | Eco2ORF16860P |
16875 | McrC family protein | |||
22510 | 71 aa hypothetical protein | |||
22515 | M | M.KpnYN1ORFGP (89% identity) | M.Eco2ORF22515P | |
22520 | helix-turn-helix domain-containing protein | |||
24760 | TrmB family transcriptional regulator | |||
24765 | M | M.EcosS9ORF10680P (100% identity) | A | M.Eco2ORF24765P |
24780 | DUF3927 family protein | |||
plasmid pR2-1030-1 | ||||
25700 | 73 aa hypothetical protein | |||
25705 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.Eco2ORF25705P |
25710 | 103 aa hypothetical protein | |||
Type IV | ||||
ORF | Gene | Most similar | Specificity | Name |
Chromosome | ||||
16870 | Alw26I/Eco31I/Esp3I family type II restriction | |||
16875 | R | EcosS9McrCP (100% identity) | Eco2McrCP | |
16880 | R | EcosS3McrBP (100% identity) | Eco2McrBP | |
16885 | glycosyltransferase | |||
17215 | type I restriction-modification system subunit | |||
17220 | R | Ecou021MrrP (100% identity) | Eco2MrrP | |
17225 | BrnT family toxin |