Escherichia coli DP033 |
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Putative Escherichia coli DP033 RM systems
Ref: Liu,Y. and Kanrar,S. unpublished
REBASE ref # 37296
| Sequence length: | GenBank #: | |
| Chromosome: | 5,114,958 bp | CP096110 |
| plasmid pDP033: | 92,396 bp | CP096111 |
REBASE acronym: EcoDP033
Org_num: 69855
All begin HXH02_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 19550 | type IV toxin-antitoxin system AbiEi family | |||
| 19555 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | EcoDP033ORF19560P |
| 19560 | M | M.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | M.EcoDP033ORF19560P |
| 19565 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.EcoDP033ORF19560P |
| 19570 | ash family protein | |||
| 21375 | restriction endonuclease | |||
| 21380 | M | M.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | M.EcoDP033ORF21380P |
| 21385 | S | S.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | S.EcoDP033ORF21380P |
| 21390 | R | Ecou021ORF19870P (100% identity) | RTACNNNNGTG | EcoDP033ORF21380P |
| 21395 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2205 | cell division protein DamX | |||
| 2210 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoDP033DamP |
| 2215 | ribulose-phosphate 3-epimerase | |||
| 2805 | DUF2556 family protein | |||
| 2810 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoDP033ORF2810P |
| 2815 | DNA-binding transcriptional regulator Fis | |||
| 10240 | phosphohydrolase | |||
| 10245 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.EcoDP033DcmP |
| 10250 | V | V.EcoTO148Dcm2P (100% identity) | V.EcoDP033DcmP | |
| 10255 | drug/metabolite exporter YedA | |||
| 13780 | DUF3927 family protein | |||
| 13795 | M | M.EcosS9ORF10680P (100% identity) | A | M.EcoDP033ORF13795P |
| 13800 | TrmB family transcriptional regulator | |||
| 16070 | helix-turn-helix transcriptional regulator | |||
| 16075 | M | M.KpnYN1ORFGP (89% identity) | M.EcoDP033ORF16075P | |
| 16080 | 72 aa hypothetical protein | |||
| 25925 | helix-turn-helix domain-containing protein | |||
| 21930 | M | M1.EcosS9ORF2810P (100% identity) | GGTCTC | M1.EcoDP033ORF21930P |
| 21935 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M2.EcoDP033ORF21930P |
| 21940 | R | EcosS9ORF2810P (100% identity) | GGTCTC | EcoDP033ORF21930P |
| 21945 | McrC family protein | |||
| plasmid pDP033 | ||||
| 25205 | 73 aa hypothetical protein | |||
| 25200 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.EcoDP033ORF25200P |
| 25195 | 103 aa hypothetical protein | |||
| 25745 | 100 aa hypothetical protein | |||
| ??? | M | M.Eco3277ORFJP (60% identity) | M.EcoDP033ORF25750P | |
| 25025 | BREX system Lon protease-like protein BrxL | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 21370 | BrnT family toxin | |||
| 21375 | R | Ecou021MrrP (100% identity) | EcoDP033MrrP | |
| 21380 | class I SAM-dependent DNA methyltransferase | |||
| 21940 | Alw26I/Eco31I/Esp3I family type II restriction | |||
| 21945 | R | EcosS9McrCP (100% identity) | EcoDP033McrCP | |
| 21950 | R | EcosS3McrBP (100% identity) | EcoDP033McrBP | |
| 25930 | glycosyltransferase family 2 protein | |||