Escherichia coli R13 |
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Putative Escherichia coli R13 RM systems
Ref: Jaen-Luchoro,D. et al. Microorganisms 11 (7), 1622 (2023)
REBASE ref # 37298
| Sequence length: | GenBank #: | |
| Chromosome: | 5,120,420 bp | CP107151 |
| plasmid pR13-1180: | 187,795 bp | CP107152 |
REBASE acronym: EcosR13
Org_num: 69862
All begin OGM42_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3155 | endoribonuclease SymE | |||
| 3160 | R | Ecou021ORF19870P (100% identity) | RTACNNNNGTG | EcosR13ORF3170P |
| 3165 | S | S.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | S.EcosR13ORF3170P |
| 3170 | M | M.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | M.EcosR13ORF3170P |
| 3175 | restriction endonuclease | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2810 | helix-turn-helix domain-containing protein | |||
| 2815 | M | M1.EcosS9ORF2810P (100% identity) | GGTCTC | M1.EcosR13ORF2815P |
| 2820 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M2.EcosR13ORF2815P |
| 2825 | R | EcosS9ORF2810P (100% identity) | GGTCTC | EcosR13ORF2815P |
| 2830 | McrC family protein | |||
| 8485 | 71 aa hypothetical protein | |||
| 8490 | M | M.KpnYN1ORFGP (89% identity) | M.EcosR13ORF8490P | |
| 8495 | helix-turn-helix domain-containing protein | |||
| 10745 | TrmB family transcriptional regulator | |||
| 10750 | M | M.EcosS9ORF10680P (100% identity) | A | M.EcosR13ORF10750P |
| 10765 | DUF3927 family protein | |||
| 14315 | drug/metabolite exporter YedA | |||
| 14320 | V | V.SflC32DcmP (74% identity) | CCWGG | V.EcosR13DcmP |
| 14325 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.EcosR13DcmP |
| 14330 | phosphohydrolase | |||
| 17720 | 121 aa hypothetical protein | |||
| 17725 | R | Sso8033ORF3755P (100% identity) | CCWGG | EcosR13ORF17730P |
| 17730 | M | M.Sso8033ORF3755P (100% identity) | CCWGG | M.EcosR13ORF17730P |
| 17735 | 257 aa hypothetical protein | |||
| 17860 | phage lysis protein EssD | |||
| 17865 | M | M.EcosR6ORF7985P (100% identity) | M.EcosR13ORF17865P | |
| 17870 | 95 aa hypothetical protein | |||
| 17905 | LexA family transcriptional regulator | |||
| 17910 | M | M.SflLIN17ORF17440P (100% identity) | GATC | M.EcosR13ORF17910P |
| 17915 | PerC family transcriptional regulator | |||
| 21665 | DNA-binding transcriptional regulator Fis | |||
| 21670 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcosR13ORF21670P |
| 21675 | DUF2556 family protein | |||
| 22265 | ribulose-phosphate 3-epimerase | |||
| 22270 | M | M.SspPIBDamP (100% identity) | GATC | M.EcosR13DamP |
| 22275 | cell division protein DamX | |||
| plasmid pR13-1180 | ||||
| 26105 | 73 aa hypothetical protein | |||
| 26110 | M | M.KpnVA569ORF28145P (100% identity) | M.EcosR13ORF26110P | |
| 26115 | 103 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2825 | Alw26I/Eco31I/Esp3I family type II restriction | |||
| 2830 | R | EcosS9McrCP (100% identity) | EcosR13McrCP | |
| 2835 | R | EcosS3McrBP (100% identity) | EcosR13McrBP | |
| 2840 | glycosyltransferase | |||
| 3170 | type I restriction-modification system subunit | |||
| 3175 | R | Ecou021MrrP (100% identity) | EcosR13MrrP | |
| 3180 | BrnT family toxin | |||