Helicobacter pylori SouthAfrica7 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Helicobacter pylori SouthAfrica7 RM systems
Ref: Kersulyte,D. et al. unpublished
REBASE ref # 16653
Complete sequence: 1,653,913 bp
GenBank #: CP002336
REBASE acronym: HpySA7
Org_num: 6611
All begin HPSA_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2200 | polyphosphate kinase | |||
| 2205 | S | S.HpyZ010ORF2180P (95% identity) | S.HpySA7ORF2206P | |
| ??? | M | M.HpySA50ORF1405P (96% identity) | M.HpySA7ORF2206P | |
| ??? | R | HpySA50ORF1405P (95% identity) | HpySA7ORF2206P | |
| 2230 | 624 aa hypothetical protein | |||
| 3790 | 54 aa hypothetical protein | |||
| ??? | S | S.HpySP509ORF4200P (93% identity) | S.HpySA7ORF3800P | |
| 3805 | heavy-metal cation-transporting P-type | |||
| 4110 | hydroxyethylthiazole kinase | |||
| ??? | R | type I site-specific deoxyribonuclease, HsdR family protein | HpySA7ORF4111P | |
| 4125 | type II restriction endonuclease | |||
| 7325 | 30 aa hypothetical protein | |||
| 7330 | S | S.HpyBR7ORF3770P (92% identity) | S.HpySA7ORF7340P | |
| 7335 | 258 aa hypothetical protein | |||
| 7340 | M | M.HpyZ007ORF7205P (96% identity) | M.HpySA7ORF7340P | |
| 7345 | R | HpyZ006XIP (96% identity) | HpySA7ORF7340P | |
| 7350 | 235 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 240 | 330 aa hypothetical protein | |||
| 245 | M | M1.HpySA50ORF1885P (97% identity) | CCTC | M1.HpySA7ORF245P |
| 250 | M | M2.HpyZ006IVP (98% identity) | CCTC | M2.HpySA7ORF245P |
| 255 | R | HpyZ001VP (95% identity) | CCTC | HpySA7ORF245P |
| 260 | sodium/proline symporter | |||
| 465 | malonyl CoA-acyl carrier protein transacylase | |||
| 475 | R | HpyZ009XIP (94% identity) | GATC | HpySA7ORF480P |
| 480 | M | M.HpySWT05X (93% identity) | GATC | M.HpySA7ORF480P |
| 485 | alpha(1,2)fucosyltransferase | |||
| 1310 | exodeoxyribonuclease VII large subunit | |||
| 1315 | M | M.Hpy201097ORF7815P (96% identity) | TCGA | M.HpySA7ORF1315P |
| 1320 | 204 aa hypothetical protein | |||
| 1320 | 204 aa hypothetical protein | |||
| ??? | R | HpyBR13ORF1430P (83% identity) | CCGG | HpySA7ORF1335P |
| 1335 | M | M.HpyL010VI (99% identity) | CCGG | M.HpySA7ORF1335P |
| 1340 | ATP-dependent Clp protease, ATP-binding subunit | |||
| 2290 | 371 aa hypothetical protein | |||
| 2295 | M | M.HpyZ006XIV (98% identity) | ATTAAT | M.HpySA7ORF2295P |
| 2300 | 282 aa hypothetical protein | |||
| 2315 | GTP-binding protein | |||
| 2320 | M | M.HpyZ001ORF3430P (97% identity) | ACGT | M.HpySA7ORF2320P |
| ??? | R | HpyZ009ORF2275P (95% identity) | ACGT | HpySA7ORF2320P |
| 2335 | 41 aa hypothetical protein | |||
| 2420 | DNA gyrase subunit B | |||
| 2425 | M | M.HpyZ007X (98% identity) | GTAC | M.HpySA7ORF2425P |
| ??? | R | HpyZ009XIIP (90% identity) | GTAC | HpySA7ORF2425P |
| 2440 | outer membrane protein | |||
| 3160 | glycerol-3-phosphate dehydrogenase | |||
| 3165 | RM | 233 aa hypothetical protein | HpySA7ORF3165P | |
| 3170 | 42 aa hypothetical protein | |||
| ??? | type I site-specific deoxyribonuclease, HsdR family protein | |||
| 4125 | R | HpyZ001ORF1505P (88% identity) | GGCC | HpySA7ORF4125P |
| 4130 | 228 aa hypothetical protein | |||
| 4405 | flagellar hook protein FlgE | |||
| 4410 | R | HpyZ001XIIIP (98% identity) | GTNNAC | HpySA7ORF4415P |
| 4415 | M | M.HpyZ001XIII (97% identity) | GTNNAC | M.HpySA7ORF4415P |
| 4420 | ATP-dependent DNA helicase | |||
| 5255 | biotin carboxylase | |||
| ??? | M | 250 aa hypothetical protein HPSA20_1153 | TCNNGA | M.HpySA7ORF5265P |
| 5270 | R | HpyZ006IXP (99% identity) | TCNNGA | HpySA7ORF5265P |
| 5275 | 201 aa hypothetical protein | |||
| 5450 | 144 aa hypothetical protein | |||
| 5455 | R | HpySA50ORF601P (94% identity) | GCGC | HpySA7ORF5460P |
| 5460 | M | M.HpyZ009XIV (99% identity) | GCGC | M.HpySA7ORF5460P |
| 5465 | FlgM protein | |||
| 5760 | 27 aa hypothetical protein | |||
| 5765 | M | M.HpySA50ORF532P (98% identity) | TCNGA | M.HpySA7ORF5765P |
| 5770 | R | HpyU408XP (97% identity) | TCNGA | HpySA7ORF5765P |
| 5775 | purine-nucleoside phosphorylase | |||
| 6600 | 695 aa hypothetical protein | |||
| 6605 | M | M.HpyZ009I (99% identity) | CATG | M.HpySA7ORF6605P |
| 6610 | R | HpyZ009IP (99% identity) | CATG | HpySA7ORF6605P |
| 6615 | serine acetyltransferase | |||
| 6980 | DNA polymerase I | |||
| ??? | S | S2.HpySA50ORF245P (85% identity) | S.HpySA7ORF6995AP | |
| ??? | S | S1.Hpy33CORF7340P (94% identity) | S.HpySA7ORF6995BP | |
| 6995 | RM | HpySA20ORF1536P (98% identity) | HpySA7ORF6995P | |
| 7000 | 191 aa hypothetical protein | |||
| 7135 | 304 aa hypothetical protein | |||
| ??? | R | HpyZ007ORF6875P (90% identity) | CCATC | HpySA7ORF7136P |
| 7150 | outer membrane protein (omp32) | |||
| 7230 | 32 aa hypothetical protein | |||
| ??? | RM | HpyZ008ORF6965P (70% identity) | HpySA7ORF7240P | |
| ??? | type III restriction enzyme | |||
| 7435 | 67 aa hypothetical protein | |||
| 7440 | M | M.HpyZ001IX (98% identity) | TGCA | M.HpySA7ORF7440P |
| 7445 | R | HpySA50ORF134P (97% identity) | TGCA | HpySA7ORF7440P |
| 7450 | ribonuclease N | |||
| 7780 | nicotinate-nucleotide pyrophosphorylase | |||
| ??? | RM | Hpy26A1ORF7115P (79% identity) | HpySA7ORF7785P | |
| ??? | DNA methylase family protein | |||
| ??? | adenine specific DNA methyltransferase protein 1 | |||
| ??? | M | DNA methylase family protein | GANTC | M.HpySA7ORF7800P |
| 7805 | 57 aa hypothetical protein | |||
| ??? | R | HpySA50ORF86P (96% identity) | GANTC | HpySA7ORF7800P |
| 7815 | carboxyl-terminal protease | |||
| 7855 | 31 aa hypothetical protein | |||
| ??? | M | M.HpyZ006ORF7455P (99% identity) | M.HpySA7ORF7860P | |
| 7880 | elongation factor Ts | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | type IIS restriction-modification protein | |||
| ??? | R | HpySA20ORF1593P (97% identity) | HpySA7ORF7260P | |
| ??? | M | M.HpySA20ORF1593P (95% identity) | M.HpySA7ORF7260P | |
| 7270 | ATP-dependent DNA helicase RecG | |||
| 7460 | 55 aa hypothetical protein | |||
| 7465 | R | HpySA20ORF1638P (94% identity) | HpySA7ORF7470P | |
| 7470 | M | M.HpySP509ORF7640P (92% identity) | M.HpySA7ORF7470P | |
| 7475 | endonuclease | |||
| 7525 | rod shape-determining protein MreC | |||
| ??? | R | HpyF009ORF6845P (73% identity) | HpySA7ORF7530P | |
| 7540 | 259 aa hypothetical protein | |||
| 7710 | integrase/recombinase XercD family protein | |||
| 7715 | R | type III restriction enzyme R protein | HpySA7ORF7720P | |
| ??? | M | M.HpyZ006ORF7330P (94% identity) | M.HpySA7ORF7720P | |
| 7730 | transcriptional regulator | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2510 | 50S ribosomal protein L9 | |||
| ??? | R | HpyZ006GmrSDP (27% identity) | HpySA7GmrSDBP | |
| ??? | R | Hpyfe79GmrSDP (49% identity) | HpySA7GmrSDAP | |
| 2525 | glutamine synthetase | |||