Helicobacter pylori India7 |
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Putative Helicobacter pylori India7 RM systems
Ref: Kersulyte,D. et al. unpublished
REBASE ref # 12400
Complete sequence: 1,675,918 bp
GenBank #: CP002331
REBASE acronym: Hpy7
Org_num: 6607
All begin HPIN_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2055 | 36 aa hypothetical protein | |||
| 2060 | S | S.HpyMM10ORF1975P (98% identity) | S.Hpy7ORF2065P | |
| 2065 | M | M.HpyBR4ORF2210P (95% identity) | M.Hpy7ORF2065P | |
| 2070 | R | HpySP802ORF2095P (92% identity) | Hpy7ORF2065P | |
| 2075 | 631 aa hypothetical protein | |||
| 2355 | integral membrane protein | |||
| 2360 | M | M.HpyU410ORF2270P (93% identity) | M.Hpy7ORF2360P | |
| 2365 | S | S.Hpyfe49ORF4360P (95% identity) | S.Hpy7ORF2360P | |
| 2370 | R | HpyKH39ORFVP (95% identity) | Hpy7ORF2360P | |
| 2375 | hydroxyethylthiazole kinase | |||
| 2645 | cadmium-transporting ATPase | |||
| 2650 | S | S.HpyL024ORF3700P (66% identity) | S.Hpy7ORF2650P | |
| 2655 | 46 aa hypothetical protein | |||
| 7430 | 235 aa hypothetical protein | |||
| 7435 | R | HpyME40ORF7430P (96% identity) | Hpy7ORF7440P | |
| 7440 | M | M.HpyGT7XII (96% identity) | M.Hpy7ORF7440P | |
| 7445 | S | S.HpyCRI2VII (90% identity) | S.Hpy7ORF7440P | |
| 7450 | 30 aa hypothetical protein | |||
| 7960 | formyltetrahydrofolate hydrolase | |||
| 7965 | S | S.HpyC023XIV (98% identity) | S.Hpy7ORF7965P | |
| 7970 | 30 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 220 | 330 aa hypothetical protein | |||
| ??? | M | M.HpyN6ORFPP (49% identity) | CCTC | M.Hpy7ORF225P |
| 240 | Symporter, SSS family (Proline Permease); | |||
| 425 | malonyl CoA-acyl carrier protein transacylase | |||
| 435 | R | HpyGRE046IXP (93% identity) | GATC | Hpy7ORF440P |
| 440 | M | M.HpyNP13IX (98% identity) | GATC | M.Hpy7ORF440P |
| 455 | 176 aa hypothetical protein | |||
| 860 | elongation factor P | |||
| 865 | M | DNA-cytosine methyltransferase | M.Hpy7ORF865P | |
| 870 | nitrite extrusion protein 2 | |||
| 1165 | exodeoxyribonuclease VII large subunit | |||
| 1170 | M | M.HpyID10IX (96% identity) | TCGA | M.Hpy7ORF1170P |
| 1175 | 152 aa hypothetical protein | |||
| 1175 | 152 aa hypothetical protein | |||
| 1180 | R | HpyK043IVP (82% identity) | CCGG | Hpy7ORF1185P |
| 1185 | M | M.HpyPO107IV (100% identity) | CCGG | M.Hpy7ORF1185P |
| 1190 | heat shock protein | |||
| 1600 | GTP-binding protein LepA | |||
| 1605 | M | M.HpyKG3ORF1905P (99% identity) | GCNGC | M.Hpy7ORF1605P |
| 1610 | 156 aa hypothetical protein | |||
| 2145 | outer membrane protein (omp22) | |||
| 2150 | M | M.HpyMM07II (97% identity) | ATTAAT | M.Hpy7ORF2150P |
| 2155 | 282 aa hypothetical protein | |||
| 2160 | GTP-binding protein | |||
| 2165 | M | M.HpyIS11II (99% identity) | ACNGT | M.Hpy7ORF2165P |
| 2170 | R | HpySP413IIP (99% identity) | ACNGT | Hpy7ORF2165P |
| 2175 | type II DNA modification | |||
| 2170 | type II restriction endonuclease | |||
| 2175 | M | M.HpySP17ORF1880P (98% identity) | ACGT | M.Hpy7ORF2175P |
| 2180 | R | HpyL032ORF2395P (97% identity) | ACGT | Hpy7ORF2175P |
| 2185 | catalase-like protein | |||
| 3200 | 133 aa hypothetical protein | |||
| 3205 | R | HpyMM01VIP (99% identity) | CCNNGG | Hpy7ORF3210P |
| 3210 | M | M.Hpyfe62ORF3865P (100% identity) | CCNNGG | M.Hpy7ORF3210P |
| 3215 | 270 aa hypothetical protein | |||
| 3295 | 484 aa hypothetical protein | |||
| 3300 | RM | HpyBG4ORF3615P (60% identity) | Hpy7ORF3300P | |
| 3305 | type II R-M system protein | |||
| 3300 | 1067 aa hypothetical protein | |||
| 3305 | RM | type II R-M system protein | Hpy7ORF3305P | |
| 3310 | anaerobic glycerol-3-phosphate | |||
| 4375 | 406 aa hypothetical protein | |||
| 4380 | R | HpyMM05VIIP (99% identity) | GTAC | Hpy7ORF4385P |
| 4385 | M | M.HpyPE124V (99% identity) | GTAC | M.Hpy7ORF4385P |
| 4390 | DNA gyrase subunit B | |||
| 4620 | flagellar hook protein FlgE | |||
| 4625 | R | Hpy5019ORF7585P (95% identity) | GTNNAC | Hpy7ORF4630P |
| 4630 | M | M.HpyC117XI (97% identity) | GTNNAC | M.Hpy7ORF4630P |
| 4635 | Rep helicase | |||
| 5350 | biotin carboxylase | |||
| 5355 | M | M.HpyG036XV (98% identity) | TCNNGA | M.Hpy7ORF5355P |
| 5360 | R | HpyIR1XIP (100% identity) | TCNNGA | Hpy7ORF5355P |
| 5365 | 199 aa hypothetical protein | |||
| 5555 | 144 aa hypothetical protein | |||
| 5560 | M | M.HpyIR3XIV (96% identity) | GCGC | M.Hpy7ORF5560P |
| 5565 | 67 aa hypothetical protein | |||
| 5860 | 43 aa hypothetical protein | |||
| 5865 | M | M.HpyMM06IX (99% identity) | TCNGA | M.Hpy7ORF5865P |
| 5870 | R | HpyMM06IXP (99% identity) | TCNGA | Hpy7ORF5865P |
| 5875 | purine-nucleoside phosphorylase | |||
| 6365 | 222 aa hypothetical protein | |||
| 6370 | M | M.HpyF009XIII (96% identity) | CATG | M.Hpy7ORF6370P |
| 6375 | 48 aa hypothetical protein | |||
| 7100 | protease | |||
| 7105 | RM | adenine specific DNA methyltransferase | Hpy7ORF7105P | |
| 7110 | 36 aa hypothetical protein | |||
| 7110 | 36 aa hypothetical protein | |||
| 7115 | RM | Hpy05124ORFIP (93% identity) | Hpy7ORF7115P | |
| 7120 | nicotinate-nucleotide pyrophosphorylase | |||
| 7170 | response regulator | |||
| 7175 | R | HpyL002VP (97% identity) | GAAGA | Hpy7ORF7180P |
| 7180 | M | M2.HpyGE9VI (98% identity) | GAAGA | M1.Hpy7ORF7180P |
| 7185 | M | M2.HpyIN10V (99% identity) | GAAGA | M2.Hpy7ORF7180P |
| ??? | Type III restriction-modification system methylation subunit | |||
| 7330 | lipopolysaccharide biosynthesis | |||
| 7335 | R | HpyCOL305IXP (60% identity) | TGCA | Hpy7ORF7336P |
| ??? | M | M.HpyP109XIII (91% identity) | TGCA | M.Hpy7ORF7336P |
| 7350 | 67 aa hypothetical protein | |||
| 7515 | type III restriction enzyme | |||
| ??? | RM | HpyKH4ORFXP (91% identity) | Hpy7ORFAP | |
| 7530 | 51 aa hypothetical protein | |||
| 7605 | outer membrane protein (omp32) | |||
| 7610 | R | Hpy13094IVP (49% identity) | Hpy7ORF7615P | |
| 7615 | M | M.HpyUM067ORF4540P (100% identity) | GDGCHC | M.Hpy7ORF7615P |
| 7620 | 355 aa hypothetical protein | |||
| 7745 | 191 aa hypothetical protein | |||
| 7750 | RM | HpyU208ORF7110P (97% identity) | Hpy7ORF7750P | |
| 7755 | S | S.HpyLI13ORF7195P (93% identity) | S.Hpy7ORF7750P | |
| 7760 | DNA polymerase I | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3700 | 54 aa hypothetical protein | |||
| 3705 | M | M.HpyDO9ORF2915P (95% identity) | M.Hpy7ORF3705P | |
| 3710 | R | type III restriction enzyme R protein | Hpy7ORF3705P | |
| 3715 | 36 aa hypothetical protein | |||
| 3900 | 262 aa hypothetical protein | |||
| 3905 | R | HpyBG10XIIIP (27% identity) | Hpy7ORF3850P | |
| 3910 | 2-oxoglutarate-acceptor oxidoreductase subunit | |||
| 7185 | type IIS restriction enzyme M2 protein (mod) | |||
| ??? | M | M.HpyT001XVII (95% identity) | M.Hpy7ORF7186P | |
| 7200 | R | HpyMM07ORF6395P (91% identity) | Hpy7ORF7186P | |
| 7205 | rod shape-determining protein MreC | |||
| 7255 | endonuclease G | |||
| 7260 | M | M.HpyPO10ORF325P (94% identity) | M.Hpy7ORF7260P | |
| 7265 | R | HpyKH26ORFXP (89% identity) | Hpy7ORF7260P | |
| 7270 | 33 aa hypothetical protein | |||
| 7500 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.HpyKH14ORFPP (95% identity) | M.Hpy7ORF7505P | |
| 7515 | R | HpyNAB47ORFOP (95% identity) | Hpy7ORF7505P | |
| ??? | 1204 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4330 | 50S ribosomal protein L9 | |||
| ??? | R | HpyGE1GmrSDP (49% identity) | Hpy7GmrSDP | |
| 4345 | glutamine synthetase | |||