Helicobacter pylori HP45k |
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Putative Helicobacter pylori HP45k RM systems
Ref: Voropaev,E.V. et al. unpublished
REBASE ref # 37136
Complete sequence: 1,654,504 bp
GenBank #: CP129105
REBASE acronym: Hpy45k
Org_num: 69048
All begin QU610_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2140 | RNA degradosome polyphosphate kinase | |||
| 2150 | S | S.HpySP105ORF2100P (99% identity) | CACNNNNNTTA | S.Hpy45kORF2155P |
| 2155 | M | M.HpyLI21ORF2125P (96% identity) | CACNNNNNTTA | M.Hpy45kORF2155P |
| 2160 | R | HpyR02ORF2135P (65% identity) | CACNNNNNTTA | Hpy45kORF2155P |
| 2165 | type I restriction endonuclease | |||
| 2425 | type I restriction endonuclease | |||
| 2430 | M | M.HpyGE12ORF2795P (97% identity) | M.Hpy45kORF2430P | |
| 2435 | S | S.Hpyfe118ORF3505P (94% identity) | S.Hpy45kORF2430P | |
| 2440 | R | HpyP109ORF4295P (95% identity) | Hpy45kORF2430P | |
| 2445 | hydroxyethylthiazole kinase | |||
| 2720 | heavy metal translocating P-type ATPase | |||
| 2725 | S | S.HpyT006ORF3730P (63% identity) | S.Hpy45kORF2725P | |
| 2730 | outer membrane beta-barrel protein HofF | |||
| 6825 | 90 aa hypothetical protein | |||
| 6830 | S | S.HpyGE4ORF6865P (98% identity) | S.Hpy45kORF6830P | |
| 6835 | formyltetrahydrofolate deformylase | |||
| 7600 | integrase | |||
| 7605 | S | S1.Hpy1198ORF1010P (43% identity) | S.Hpy45kORF7615P | |
| 7610 | CAAX protease | |||
| 7615 | M | M.HpyL009ORF7380P (95% identity) | M.Hpy45kORF7615P | |
| 7620 | R | HpyP007ORF7665P (93% identity) | Hpy45kORF7615P | |
| 7625 | SprT family zinc-dependent metalloprotease | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 260 | site-specific DNA-methyltransferase | |||
| 265 | M | M.HpyGRE039ORF255P (97% identity) | M.Hpy45kORF265P | |
| 270 | glycosyltransferase family 8 protein | |||
| 405 | site-specific DNA-methyltransferase | |||
| 410 | M | M2.Hpy84ORF6215P (98% identity) | GAAGA | M1.Hpy45kORF410P |
| 415 | M | M1.HpyN6ORFTP (100% identity) | GAAGA | M2.Hpy45kORF410P |
| 420 | R | HpyCOL122VIP (97% identity) | GAAGA | Hpy45kORF410P |
| 425 | copper response regulator transcription factor | |||
| 475 | carboxylating nicotinate-nucleotide | |||
| 480 | RM | HpyPO106ORF6755P (86% identity) | Hpy45kORF480P | |
| 485 | DNA methyltransferase | |||
| 485 | DNA methyltransferase | |||
| 490 | M | M.HpyLI29VI (100% identity) | GANTC | M.Hpy45kORF490P |
| 495 | R | HpySP13VIP (97% identity) | GANTC | Hpy45kORF490P |
| 500 | 57 aa hypothetical protein | |||
| 655 | serine O-acetyltransferase | |||
| ??? | R | HpySW25IP (96% identity) | CATG | Hpy45kORF670P |
| 670 | M | M.HpyBG6I (97% identity) | CATG | M.Hpy45kORF670P |
| 675 | HAD family hydrolase | |||
| 1120 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 1125 | M | M.Hpy030XII (97% identity) | GCGC | M.Hpy45kORF1125P |
| 1130 | 144 aa hypothetical protein | |||
| 1315 | Laminin subunit alpha-2 precursor | |||
| 1320 | R | Hpy449ORF7495P (98% identity) | TCNNGA | Hpy45kORF1325P |
| 1325 | M | M.HpyL001XIII (99% identity) | TCNNGA | M.Hpy45kORF1325P |
| 1330 | acetyl-CoA carboxylase biotin carboxylase | |||
| 2235 | Hop family outer membrane protein HopJ/HopK | |||
| 2240 | M | M.HpyAL10II (98% identity) | ATTAAT | M.Hpy45kORF2240P |
| 2245 | glycosyltransferase family 9 protein | |||
| 2250 | translational GTPase TypA | |||
| 2255 | M | M.HpyI012IV (97% identity) | ACNGT | M.Hpy45kORF2255P |
| 2260 | R | HpyLI41IIP (99% identity) | ACNGT | Hpy45kORF2255P |
| 2265 | DNA cytosine methyltransferase | |||
| 2260 | GIY-YIG nuclease family protein | |||
| 2265 | M | M.Hpyoh1ORF5085P (98% identity) | ACGT | M.Hpy45kORF2265P |
| 2270 | R | HpyI017ORF2260P (99% identity) | ACGT | Hpy45kORF2265P |
| 2275 | catalase | |||
| 3285 | outer membrane protein | |||
| 3290 | RM | HpySP507ORF3345P (88% identity) | Hpy45kORF3290P | |
| 3295 | (Fe-S)-binding protein | |||
| 4095 | peptidoglycan DD-metalloendopeptidase Csd1 | |||
| ??? | R | HpyU413ORF2345P (98% identity) | GTAC | Hpy45kORF4110P |
| 4110 | M | M.HpyLI06X (98% identity) | GTAC | M.Hpy45kORF4110P |
| 4115 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 4720 | ATP-dependent helicase | |||
| 4725 | M | M.HpySP316ORF4795P (98% identity) | GTNNAC | M.Hpy45kORF4725P |
| 4730 | R | HpyNP03VIIIP (94% identity) | GTNNAC | Hpy45kORF4725P |
| 4735 | flagellar hook protein FlgE | |||
| 4835 | site-specific DNA-methyltransferase | |||
| 4840 | M | M2.HpyPE140VIP (63% identity) | M.Hpy45kORF4840P | |
| 4845 | site-specific DNA-methyltransferase | |||
| 4840 | DNA cytosine methyltransferase | |||
| 4845 | M | M.Hpyfe8ORF160P (99% identity) | GTSAC | M.Hpy45kORF4845P |
| 4850 | R | Hpyfe32ORF6935P (96% identity) | GTSAC | Hpy45kORF4845P |
| 4855 | restriction endonuclease | |||
| 5055 | HTH domain-containing protein | |||
| 5060 | M | M.HpySWT04VII (97% identity) | GATC | M.Hpy45kORF5060P |
| 5065 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 5460 | IS1595 family transposase | |||
| ??? | M | M.HpyBGR10ORF860P (100% identity) | M.Hpy45kORF5465P | |
| 5480 | R | R1.HpyLI20ORF870P (99% identity) | R1.Hpy45kORF5465P | |
| 5485 | R | R2.HpyBGR10ORF860P (99% identity) | R2.Hpy45kORF5465P | |
| 5490 | pseudaminic acid synthase | |||
| 5880 | exodeoxyribonuclease VII large subunit | |||
| 5885 | M | M.HpyK042III (96% identity) | TCGA | M.Hpy45kORF5885P |
| 5890 | 148 aa hypothetical protein | |||
| 5895 | 51 aa hypothetical protein | |||
| 5900 | R | HpyLI35VIP (99% identity) | CCGG | Hpy45kORF5905P |
| 5905 | M | M.HpyNAD1ORFMP (99% identity) | CCGG | M.Hpy45kORF5905P |
| 5910 | AAA family ATPase | |||
| 6380 | glycosyltransferase family 9 protein | |||
| 6385 | M | M.HpySWT07XV (100% identity) | GATATC | M.Hpy45kORF6385P |
| ??? | R | HpySWT07XVP (100% identity) | GATATC | Hpy45kORF6385P |
| 6400 | DNA methyltransferase | |||
| 7085 | 672 aa hypothetical protein | |||
| 7090 | RM | Hpy24AORFB1P (89% identity) | Hpy45kORF7090P | |
| 7095 | CAAX protease | |||
| 7300 | ComF family protein | |||
| 7305 | RM | HpyMT5125ORF7210P (98% identity) | CYANNNNNNTGA | Hpy45kORF7305P |
| 7310 | S | S.HpyT004ORF7320P (93% identity) | S.Hpy45kORF7305P | |
| 7315 | DNA polymerase I | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 325 | biotin synthase | |||
| 330 | R | HpyG63ORFA1P (90% identity) | Hpy45kORF335P | |
| 335 | M | M.HpyP110ORF6540P (96% identity) | M.Hpy45kORF335P | |
| 340 | DNA/RNA non-specific endonuclease | |||
| 395 | rod shape-determining protein MreC | |||
| 400 | R | HpyG036XIXP (92% identity) | GGCAA | Hpy45kORF405P |
| 405 | M | M.Hpy20AORFVP (93% identity) | GGCAA | M.Hpy45kORF405P |
| 410 | site-specific DNA-methyltransferase | |||
| 7065 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.HpyL006ORF7535P (96% identity) | GACC | M.Hpy45kORF7070P |
| 7080 | R | HpyI022ORF6665P (95% identity) | GACC | Hpy45kORF7070P |
| 7085 | 672 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3470 | NAD(P)H-dependent oxidoreductase | |||
| 3475 | R | HpyL024GmrSD2P (94% identity) | Hpy45kGmrSD2P | |
| 3480 | tetratricopeptide repeat protein | |||
| 4055 | 50S ribosomal protein L9 | |||
| 4060 | R | HpySW08GmrSDP (87% identity) | Hpy45kGmrSDP | |
| 4065 | type I glutamate--ammonia ligase | |||