Escherichia coli VG55B1 |
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Putative Escherichia coli VG55B1 RM systems
Ref: Perreten,V. et al. unpublished
REBASE ref # 37120
Complete sequence: 5,057,461 bp
GenBank #: CP128587
REBASE acronym: Eco55B1
Org_num: 69012
All begin QUR97_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 14575 | endoribonuclease SymE | |||
| 14580 | S | S.EcoEC507ORF5530P (100% identity) | S.Eco55B1ORF14585P | |
| 14585 | M | M.EcoRM9088ORF13950P (100% identity) | M.Eco55B1ORF14585P | |
| 14590 | R | Sbo192ORF9605P (100% identity) | Eco55B1ORF14585P | |
| 14595 | 275 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2890 | NUMOD4 domain-containing protein | |||
| 2895 | M | M.EcoWN4ORF7335P (100% identity) | GATC | M.Eco55B1ORF2895P |
| 2900 | NinE family protein | |||
| 7980 | DNA-binding transcriptional regulator Fis | |||
| 7985 | M | M.Ssp28760ORF20045P (100% identity) | ATGCAT | M.Eco55B1ORF7985P |
| 7990 | DUF2556 family protein | |||
| 8600 | ribulose-phosphate 3-epimerase | |||
| 8605 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco55B1DamP |
| 8610 | cell division protein DamX | |||
| 10310 | integrase | |||
| 10315 | R | Eco8082DptFP (99% identity) | Eco55B1DptFP | |
| 10320 | DNA phosphorothioation-dependent restriction | |||
| 10315 | DNA phosphorothioation-dependent restriction | |||
| 10320 | R | Fnu048DptGP (99% identity) | Eco55B1DptGP | |
| 10325 | DNA phosphorothioation-dependent restriction | |||
| 10320 | DNA phosphorothioation-dependent restriction | |||
| 10325 | R | Eco8082DptHP (99% identity) | Eco55B1DptHP | |
| 10330 | 172 aa hypothetical protein | |||
| 10335 | DNA phosphorothioation-associated DGQHR protein | |||
| 10340 | M | M.Eco8082DndEP (100% identity) | M.Eco55B1DndEP | |
| 10345 | DNA sulfur modification protein DndD | |||
| 10340 | DNA sulfur modification protein DndE | |||
| 10345 | M | M.Eco8082DndDP (100% identity) | M.Eco55B1DndDP | |
| 10350 | DNA phosphorothioation system sulfurtransferase | |||
| 10345 | DNA sulfur modification protein DndD | |||
| 10350 | M | M.SflFF24DndCP (100% identity) | M.Eco55B1DndCP | |
| 10355 | DNA sulfur modification protein DndB | |||
| 10350 | DNA phosphorothioation system sulfurtransferase | |||
| 10355 | M | M.SflFF24DndBP (100% identity) | M.Eco55B1DndBP | |
| 10360 | transposase | |||
| 18840 | NUMOD4 domain-containing protein | |||
| 18845 | M | M.EcoWN4ORF7335P (100% identity) | GATC | M.Eco55B1ORF18845P |
| 18850 | NinE family protein | |||
| 21055 | phosphohydrolase | |||
| 21060 | M | M.Ecou021DcmP (100% identity) | CCWGG | M.Eco55B1DcmP |
| 21065 | V | V.SsoSE61DcmP (100% identity) | CCWGG | V.Eco55B1DcmP |
| 21070 | drug/metabolite exporter YedA | |||
| 23120 | DUF977 family protein | |||
| 23125 | M | M.SsoSE61ORF20220P (100% identity) | M.Eco55B1ORF23125P | |
| 23130 | 139 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 14560 | DUF1127 domain-containing protein | |||
| ??? | R | EcoR15GmrSDP (99% identity) | Eco55B1GmrSDP | |
| 14575 | endoribonuclease SymE | |||