Escherichia coli O2:K1:H4 |
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Putative Escherichia coli O2:K1:H4 RM systems
Ref: Ha,E.-J. unpublished
REBASE ref # 37057
| Sequence length: | GenBank #: | |
| Chromosome: | 4,917,117 bp | CP126937 |
| Chromosome: | 4,904,364 bp | CP126928 |
| plasmid pEND_Eco 12053-2: | 98,749 bp | CP126930 |
| plasmid pEND_Eco 19019-2: | 96,877 bp | CP126939 |
REBASE acronym:
Org_num:
All begin QQA27_, QQA31_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3620 | transposase domain-containing protein | |||
| 3625 | M | M.SenSI170ORF3660P (100% identity) | AGGNNNNNRTTG | M.Eco19019ORF3625P |
| 3630 | AAA family ATPase | |||
| 3635 | IS3 family transposase | |||
| 3640 | 53 aa hypothetical protein | |||
| 3645 | S | S2.SenSI170ORF3660P (100% identity) | AGGNNNNNRTTG | S.Eco19019ORF3625P |
| 3650 | R | SenSI170ORF3660P (100% identity) | AGGNNNNNRTTG | Eco19019ORF3625P |
| 3655 | IS3 family transposase | |||
| 20035 | 322 aa hypothetical protein | |||
| 20040 | R | SflC32ORFCP (100% identity) | AAGNNNNNNNRTDCC | Eco19019ORF20045P |
| 20045 | M | M.SspS13ORF3945P (100% identity) | AAGNNNNNNNRTDCC | M.Eco19019ORF20045P |
| 20050 | S | S.SflC32ORFCP (100% identity) | AAGNNNNNNNRTDCC | S.Eco19019ORF20045P |
| 20055 | endoribonuclease SymE | |||
| Chromosome | ||||
| 20140 | 322 aa hypothetical protein | |||
| 20145 | R | SflC32ORFCP (100% identity) | AAGNNNNNNNRTDCC | Eco12053ORF20150P |
| 20150 | M | M.SspS13ORF3945P (100% identity) | AAGNNNNNNNRTDCC | M.Eco12053ORF20150P |
| 20155 | S | S.SflC32ORFCP (100% identity) | AAGNNNNNNNRTDCC | S.Eco12053ORF20150P |
| 20160 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1960 | cell division protein DamX | |||
| 1965 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco19019DamP |
| 1970 | ribulose-phosphate 3-epimerase | |||
| 2560 | DUF2556 family protein | |||
| 2565 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.Eco19019ORF2565P |
| 2570 | DNA-binding transcriptional regulator Fis | |||
| 9865 | phosphohydrolase | |||
| 9870 | M | M.SdySWHE2DcmP (100% identity) | CCWGG | M.Eco19019DcmP |
| 9875 | V | V.EcosEC7DcmP (100% identity) | CCWGG | V.Eco19019DcmP |
| 9880 | drug/metabolite exporter YedA | |||
| 13230 | 39 aa hypothetical protein | |||
| 13250 | M | M.EcoY26ORF70P (100% identity) | A | M.Eco19019ORF13250P |
| 13255 | TrmB family transcriptional regulator | |||
| 18145 | HEPN domain-containing protein | |||
| 18150 | R | Ecos67ORF8885P (100% identity) | Eco19019ORF18155P | |
| 18155 | M | M.Ecos67ORF8885P (100% identity) | M.Eco19019ORF18155P | |
| 18160 | 59 aa hypothetical protein | |||
| Chromosome | ||||
| 1775 | cell division protein DamX | |||
| 1780 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco12053DamP |
| 1785 | ribulose-phosphate 3-epimerase | |||
| 2375 | DUF2556 family protein | |||
| 2380 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.Eco12053ORF2380P |
| 2385 | DNA-binding transcriptional regulator Fis | |||
| 6035 | PerC family transcriptional regulator | |||
| 6040 | M | M.EcoY26ORF4515P (100% identity) | GATC | M.Eco12053ORF6040P |
| 6045 | LexA family transcriptional regulator | |||
| 10590 | TrmB family transcriptional regulator | |||
| 10595 | M | M.EcoY26ORF70P (100% identity) | A | M.Eco12053ORF10595P |
| 10615 | 39 aa hypothetical protein | |||
| 13910 | drug/metabolite exporter YedA | |||
| 13915 | V | V.EcosEC7DcmP (100% identity) | CCWGG | V.Eco12053DcmP |
| 13920 | M | M.SdySWHE2DcmP (100% identity) | CCWGG | M.Eco12053DcmP |
| 13925 | phosphohydrolase | |||
| plasmid pEND_Eco 12053-2 | ||||
| 25505 | tellurite/colicin resistance protein | |||
| 25520 | M | M.Eco9071ORF4866P (100% identity) | M.Eco12053ORF25520P | |
| 25525 | recombination-associated protein RdgC | |||
| plasmid pEND_Eco 19019-2 | ||||
| 24860 | 101 aa hypothetical protein | |||
| 24865 | M | M.Sso866ORF27155P (100% identity) | M.Eco19019ORF24865P | |
| 24870 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 6230 | recombinase family protein | |||
| 6235 | R | EspFAAGmrSDP (37% identity) | Eco12053GmrSD2P | |
| 6240 | IS3 family transposase | |||
| 6240 | IS3 family transposase | |||
| 6245 | R | EspFAAGmrSDP (59% identity) | Eco12053GmrSD3P | |
| 6250 | DinI-like family protein | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 14175 | NinE family protein | |||
| 14180 | M | M.EcosC25ORF16305P (100% identity) | GATC | M.Eco12053ORF14180P |
| 14185 | recombination protein NinB | |||