|
Putative Escherichia coli O78:H4 RM systems
Ref: Ha,E.-J. unpublished
REBASE ref # 37057
Sequence length: | GenBank #: | |
Chromosome: | 5,021,334 bp | CP126948 |
Chromosome: | 5,170,367 bp | CP126952 |
Chromosome: | 4,998,625 bp | CP126955 |
Chromosome: | 4,885,187 bp | CP126934 |
plasmid pEND_Eco 12049-2: | 114,229 bp | CP126954 |
plasmid pEND_Eco 14033-2: | 115,173 bp | CP126950 |
plasmid pEND_Eco 14033-3: | 108,542 bp | CP126951 |
plasmid pEND_Eco19057-1: | 110,406 bp | CP126935 |
REBASE acronym: EcoE123
Org_num: 68706
All begin QQA21_, QQA22_, QQA23_, QQA26_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
Chromosome | ||||
4275 | DNA-binding protein | |||
4280 | M | M.Ecos641ORF18845P (100% identity) | M.Eco14033ORF4280P | |
4285 | S | S.EcoWH398ORF26840P (100% identity) | S.Eco14033ORF4280P | |
4290 | R | EcoW087ORF4400P (100% identity) | Eco14033ORF4280P | |
4295 | lactate utilization protein C | |||
18810 | UvrD-helicase domain-containing protein | |||
18815 | R | Sso8ORF18020P (100% identity) | Eco14033ORF18830P | |
18820 | DUF4268 domain-containing protein | |||
18825 | S | S.Sso8ORF18020P (100% identity) | S.Eco14033ORF18830P | |
18830 | M | M.Sso8ORF18020P (100% identity) | M.Eco14033ORF18830P | |
18835 | type I Zorya anti-phage system protein ZorA1 | |||
20810 | restriction endonuclease | |||
20815 | M | M.Ecos641ORF3050P (100% identity) | GATANNNNNNTAG | M.Eco14033ORF20815P |
20820 | S | S.Ecos641ORF3050P (100% identity) | GATANNNNNNTAG | S.Eco14033ORF20815P |
20825 | R | Ecos641ORF3050P (100% identity) | GATANNNNNNTAG | Eco14033ORF20815P |
20830 | endoribonuclease SymE | |||
Chromosome | ||||
21530 | adenine/cytosine-specific restriction | |||
21535 | R | Ssp28760ORF3465P (100% identity) | TGANNNNNNNNTGCT | Eco12049ORF21540P |
21540 | M | M.Ssp28760ORF3465P (100% identity) | TGANNNNNNNNTGCT | M.Eco12049ORF21540P |
21545 | S | S.EcosBORF22035P (100% identity) | TGANNNNNNNNTGCT | S.Eco12049ORF21540P |
21550 | endoribonuclease SymE | |||
Chromosome | ||||
16510 | integrase core domain-containing protein | |||
16515 | M | M.SenS688ORF13495P (100% identity) | ACAYNNNNCTG | M.EcoE123ORF16515P |
16520 | S | S.Sen12509ORF5865P (100% identity) | ACAYNNNNCTG | S.EcoE123ORF16515P |
16525 | R | Sen12509ORF5865P (100% identity) | ACAYNNNNCTG | EcoE123ORF16515P |
16530 | IS1 family transposase | |||
Chromosome | ||||
12185 | integrase core domain-containing protein | |||
12190 | M | M.SenS688ORF13495P (100% identity) | ACAYNNNNCTG | M.Eco19057ORF12190P |
12195 | S | S.Sen12509ORF5865P (100% identity) | ACAYNNNNCTG | S.Eco19057ORF12190P |
12200 | R | Sen12509ORF5865P (100% identity) | ACAYNNNNCTG | Eco19057ORF12190P |
12205 | IS1 family transposase | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
Chromosome | ||||
1830 | IS21-like element ISEc12 family helper ATPase | |||
1835 | M | M1.EcosS9ORF2810P (100% identity) | GGTCTC | M1.EcoE123ORF1835P |
1840 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M2.EcoE123ORF1835P |
1845 | R | EcosS9ORF2810P (100% identity) | GGTCTC | EcoE123ORF1835P |
1850 | McrC family protein | |||
2400 | PerC family transcriptional regulator | |||
2405 | M | M.Sso90ORF15820P (100% identity) | GATC | M.EcoE123ORF2405P |
2410 | LexA family transcriptional regulator | |||
5415 | 67 aa hypothetical protein | |||
5420 | M | M.EcoNC22ORF10915P (100% identity) | M.EcoE123ORF5420P | |
5425 | 63 aa hypothetical protein | |||
7215 | TraR/DksA family transcriptional regulator | |||
7220 | M | M.EcoO78ORF7950P (100% identity) | GATC | M.EcoE123ORF7220P |
7225 | 273 aa hypothetical protein | |||
12780 | drug/metabolite exporter YedA | |||
12785 | V | V.SflSTLE3DcmP (100% identity) | CCWGG | V.EcoE123DcmP |
12790 | M | M.EcoVEV11MDcmP (100% identity) | CCWGG | M.EcoE123DcmP |
12795 | phosphohydrolase | |||
14350 | 89 aa hypothetical protein | |||
14355 | M | M.EcoVEV10FORF15720P (100% identity) | M.EcoE123ORF14355P | |
14360 | transcriptional regulator | |||
20225 | DNA-binding transcriptional regulator Fis | |||
20230 | M | M.Ssp28760ORF20045P (100% identity) | ATGCAT | M.EcoE123ORF20230P |
20235 | DUF2556 family protein | |||
20850 | ribulose-phosphate 3-epimerase | |||
20855 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoE123DamP |
20860 | cell division protein DamX | |||
24460 | PerC family transcriptional regulator | |||
24465 | M | M.Efe41C20ORF1660P (99% identity) | GATC | M.EcoE123ORF24465P |
24470 | RusA family crossover junction | |||
Chromosome | ||||
2170 | cell division protein DamX | |||
2175 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco12049DamP |
2180 | ribulose-phosphate 3-epimerase | |||
2770 | DUF2556 family protein | |||
2775 | M | M.EcosS1ORF18905P (100% identity) | ATGCAT | M.Eco12049ORF2775P |
2780 | DNA-binding transcriptional regulator Fis | |||
9730 | phosphohydrolase | |||
9735 | M | M.SdySWHE2DcmP (100% identity) | CCWGG | M.Eco12049DcmP |
9740 | V | V.EcosEC7DcmP (100% identity) | CCWGG | V.Eco12049DcmP |
9745 | drug/metabolite exporter YedA | |||
13795 | 39 aa hypothetical protein | |||
13815 | M | M.SsoCS14ORF10750P (100% identity) | A | M.Eco12049ORF13815P |
13820 | TrmB family transcriptional regulator | |||
16560 | NinE family protein | |||
16565 | M | M.SflWW1ORF7070P (100% identity) | GATC | M.Eco12049ORF16565P |
16570 | recombination protein NinB | |||
19165 | transposase | |||
19170 | RM | SflLIN17ORF3140P (100% identity) | Eco12049ORF19170P | |
19175 | DEAD/DEAH box helicase | |||
21245 | phage lysis protein EssD | |||
21250 | M | M.Sso63633ORF22290P (100% identity) | M.Eco12049ORF21250P | |
21255 | 67 aa hypothetical protein | |||
21280 | LexA family transcriptional regulator | |||
21285 | M | M.Sso30ORF925P (100% identity) | GATC | M.Eco12049ORF21285P |
21290 | PerC family transcriptional regulator | |||
Chromosome | ||||
1730 | cell division protein DamX | |||
1735 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco14033DamP |
1740 | ribulose-phosphate 3-epimerase | |||
2330 | DUF2556 family protein | |||
2335 | M | M.EcoWH398ORF17455P (100% identity) | ATGCAT | M.Eco14033ORF2335P |
2340 | DNA-binding transcriptional regulator Fis | |||
9805 | phosphohydrolase | |||
9810 | M | M.SdySWHE2DcmP (100% identity) | CCWGG | M.Eco14033DcmP |
9815 | V | V.EcosEC7DcmP (100% identity) | CCWGG | V.Eco14033DcmP |
9820 | drug/metabolite exporter YedA | |||
16280 | NinE family protein | |||
16285 | M | M.SflWW1ORF7070P (100% identity) | GATC | M.Eco14033ORF16285P |
16290 | recombination protein NinB | |||
Chromosome | ||||
390 | PerC family transcriptional regulator | |||
395 | M | M.Sso90ORF15820P (100% identity) | GATC | M.Eco19057ORF395P |
400 | LexA family transcriptional regulator | |||
430 | 67 aa hypothetical protein | |||
435 | M | M.EcoNC22ORF10915P (100% identity) | M.Eco19057ORF435P | |
440 | 63 aa hypothetical protein | |||
2230 | TraR/DksA family transcriptional regulator | |||
2235 | M | M.EcoO78ORF7950P (100% identity) | GATC | M.Eco19057ORF2235P |
2240 | 273 aa hypothetical protein | |||
8365 | drug/metabolite exporter YedA | |||
8370 | V | V.SflSTLE3DcmP (100% identity) | CCWGG | V.Eco19057DcmP |
8375 | M | M.EcoVEV11MDcmP (100% identity) | CCWGG | M.Eco19057DcmP |
8380 | phosphohydrolase | |||
10010 | 89 aa hypothetical protein | |||
10015 | M | M.EcoVEV10FORF15720P (100% identity) | M.Eco19057ORF10015P | |
10020 | transcriptional regulator | |||
13950 | integrase | |||
13955 | R | SflFF24DptFP (100% identity) | Eco19057DptFP | |
13960 | DNA phosphorothioation-dependent restriction | |||
13955 | DNA phosphorothioation-dependent restriction | |||
13960 | R | SflFF24DptGP (100% identity) | Eco19057DptGP | |
13965 | DNA phosphorothioation-dependent restriction | |||
13960 | DNA phosphorothioation-dependent restriction | |||
13965 | R | EcosEC5DptHP (100% identity) | Eco19057DptHP | |
13970 | accessory gene regulator B family protein | |||
13980 | DGQHR domain-containing protein | |||
13985 | M | M.SflFF24DndEP (100% identity) | M.Eco19057DndEP | |
13990 | DNA sulfur modification protein DndD | |||
13985 | DNA sulfur modification protein DndE | |||
13990 | M | M.SflFF24DndDP (100% identity) | M.Eco19057DndDP | |
13995 | DNA phosphorothioation system sulfurtransferase | |||
13990 | DNA sulfur modification protein DndD | |||
13995 | M | M.SflFF24DndCP (100% identity) | M.Eco19057DndCP | |
14000 | DNA sulfur modification protein DndB | |||
13995 | DNA phosphorothioation system sulfurtransferase | |||
14000 | M | M.SflFF24DndBP (100% identity) | M.Eco19057DndBP | |
14005 | osmoprotectant transport activator ProQ | |||
15655 | DNA-binding transcriptional regulator Fis | |||
15660 | M | M.Ssp28760ORF20045P (100% identity) | ATGCAT | M.Eco19057ORF15660P |
15665 | DUF2556 family protein | |||
16280 | ribulose-phosphate 3-epimerase | |||
16285 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco19057DamP |
16290 | cell division protein DamX | |||
21110 | IS21-like element ISEc12 family helper ATPase | |||
21115 | M | M1.EcosS9ORF2810P (100% identity) | GGTCTC | M1.Eco19057ORF21115P |
21120 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M2.Eco19057ORF21115P |
21125 | R | EcosS9ORF2810P (100% identity) | GGTCTC | Eco19057ORF21115P |
21130 | McrC family protein | |||
plasmid pEND_Eco 12049-2 | ||||
26185 | 103 aa hypothetical protein | |||
26190 | M | M.StyR64ORFAP (100% identity) | M.Eco12049ORF26190P | |
26195 | 73 aa hypothetical protein | |||
plasmid pEND_Eco 14033-2 | ||||
25465 | 101 aa hypothetical protein | |||
25470 | M | M.Sso11ORF329P (100% identity) | M.Eco14033ORF25470P | |
25475 | 73 aa hypothetical protein | |||
plasmid pEND_Eco19057-1 | ||||
24555 | 103 aa hypothetical protein | |||
24560 | M | M.Sen72779ORF22555P (100% identity) | M.Eco19057ORF24560P | |
24565 | 73 aa hypothetical protein | |||
Type IV | ||||
ORF | Gene | Most similar | Specificity | Name |
Chromosome | ||||
20805 | BrnT family toxin | |||
20810 | R | EfeE4C07MrrP (100% identity) | Eco14033MrrP | |
20815 | class I SAM-dependent DNA methyltransferase | |||
Chromosome | ||||
21525 | GTPase | |||
21530 | R | Ssp28760MrrP (100% identity) | Eco12049MrrP | |
21535 | type I restriction-modification system | |||
Chromosome | ||||
1845 | Alw26I/Eco31I/Esp3I family type II restriction | |||
1850 | R | EcosS9McrCP (99% identity) | EcoE123McrCP | |
1855 | R | EcosS3McrBP (100% identity) | EcoE123McrBP | |
1860 | glycosyltransferase | |||
14275 | IS3-like element IS2 family transposase | |||
14280 | R | Ecochi7122GmrSDP (100% identity) | EcoE123GmrSDP | |
14285 | recombinase family protein | |||
Chromosome | ||||
9935 | IS3-like element IS2 family transposase | |||
9940 | R | Ecochi7122GmrSDP (100% identity) | Eco19057GmrSDP | |
9945 | recombinase family protein | |||
21125 | Alw26I/Eco31I/Esp3I family type II restriction | |||
21130 | R | EcosS9McrCP (100% identity) | Eco19057McrCP | |
21135 | R | EcosS3McrBP (100% identity) | Eco19057McrBP | |
21140 | glycosyltransferase | |||
Orphan M | ||||
ORF | Gene | Most similar | Specificity | Name |
plasmid pEND_Eco 14033-3 | ||||
26240 | 76 aa hypothetical protein | |||
26245 | M | M.Sso524ORF460P (100% identity) | GATC | M.Eco14033ORF26245P |
26250 | 269 aa hypothetical protein |