Edwardsiella ictaluri YCH |
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Putative Edwardsiella ictaluri YCH RM systems
Ref: Fu,L. and Gong,J. unpublished
REBASE ref # 37010
Complete sequence: 3,789,317 bp
GenBank #: CP040933
REBASE acronym: EicYCH
Org_num: 68348
All begin FGU63_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 170 | 194 aa hypothetical protein | |||
| 175 | R | EicT11ORF180P (100% identity) | EicYCHORF180P | |
| 180 | M | M.EicT11ORF180P (100% identity) | M.EicYCHORF180P | |
| 185 | S | S1.EicT11ORF180P (100% identity) | S1.EicYCHORF180P | |
| 190 | IS256-like element ISEic2 family transposase | |||
| 195 | IS256-like element ISEic2 family transposase | |||
| 200 | S | S2.EicT11ORF180P (100% identity) | S2.EicYCHORF180P | |
| 205 | 328 aa hypothetical protein | |||
| 2560 | 135 aa hypothetical protein | |||
| 2565 | M | M.EicT11ORF2540P (100% identity) | GGANNNNNNNVTATC | M.EicYCHORF2565P |
| 2570 | S | S.EicT11ORF2540P (100% identity) | GGANNNNNNNVTATC | S.EicYCHORF2565P |
| 2575 | R | EicORF518P (91% identity) | GGANNNNNNNVTATC | EicYCHORF2565P |
| 2580 | IS5 family transposase | |||
| 11445 | transposase | |||
| 11450 | R | EicT11ORF11480P (100% identity) | CAYNNNNNNCCTC | EicYCHORF11465P |
| 11455 | Fic family protein | |||
| 11460 | S | S.EicT11ORF11480P (100% identity) | CAYNNNNNNCCTC | S.EicYCHORF11465P |
| 11465 | M | M.EicT11ORF11480P (100% identity) | CAYNNNNNNCCTC | M.EicYCHORF11465P |
| 11470 | low-specificity L-threonine aldolase | |||
| 15660 | M48 family metallopeptidase | |||
| 15665 | R | EicT11ORF15585P (100% identity) | EicYCHORF15685P | |
| 15670 | Appr-1-p processing protein | |||
| 15675 | DUF4433 domain-containing protein | |||
| 15680 | S | S.EicT11ORF15585P (100% identity) | S.EicYCHORF15685P | |
| 15685 | M | M.EicT11ORF15585P (100% identity) | M.EicYCHORF15685P | |
| 15690 | transcription factor | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1520 | 113 aa hypothetical protein | |||
| 1525 | M | M.EicT11ORF1395P (100% identity) | M.EicYCHORF1525P | |
| 1530 | R | EicT11ORF1395P (100% identity) | EicYCHORF1525P | |
| 1535 | TIGR03747 family integrating conjugative element | |||
| 6950 | 215 aa hypothetical protein | |||
| 6955 | R | EicT11ORF6990P (100% identity) | CCWGG | EicYCHORF6960P |
| 6960 | M | M.EicORF1483P (100% identity) | CCWGG | M.EicYCHORF6960P |
| 6965 | V | V.EicT11ORF6990P (100% identity) | V.EicYCHORF6960P | |
| 6970 | transposase | |||
| 16510 | ribulose-phosphate 3-epimerase | |||
| 16515 | M | M.EicT11DamP (100% identity) | GATC | M.EicYCHDamP |
| 16520 | SPOR domain-containing protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4825 | type I restriction endonuclease subunit R | |||
| ??? | R | Eic921McrBP (100% identity) | EicYCHMcrBP | |
| 4835 | R | EicT11McrCP (100% identity) | EicYCHMcrCP | |
| 4840 | 154 aa hypothetical protein | |||