Helicobacter pylori BT112 |
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Putative Helicobacter pylori BT112 RM systems
Ref: Sripa,B. and Edwards,S.W. unpublished
REBASE ref # 37016
Complete sequence: 1,595,480 bp
GenBank #: CP122956
REBASE acronym: HpyBT112
Org_num: 68430
All begin QAD58_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4375 | outer membrane beta-barrel protein HofF | |||
| 4380 | S | S.HpyOK313ORFVP (96% identity) | CTANNNNNNNCTT | S.HpyBT112ORF4380P |
| 4385 | heavy metal translocating P-type ATPase | |||
| 4675 | hydroxyethylthiazole kinase | |||
| 4680 | R | HpyBS07ORF465P (97% identity) | HpyBT112ORF4690P | |
| 4685 | S | S.HpyBT112ORF4380P (48% identity) | S.HpyBT112ORF4690P | |
| 4690 | M | M.HpyCHN5XI (92% identity) | M.HpyBT112ORF4690P | |
| 4695 | phosphatase PAP2 family protein | |||
| 4965 | 44 aa hypothetical protein | |||
| 4970 | R | HpyYN483ORFQP (85% identity) | CCANNNNNNTAA | HpyBT112ORF4975P |
| 4975 | M | M.HpySG26ORF3930P (96% identity) | CCANNNNNNTAA | M.HpyBT112ORF4975P |
| 4980 | S | S.HpyK014ORF4440P (98% identity) | CCANNNNNNTAA | S.HpyBT112ORF4975P |
| 4990 | RNA degradosome polyphosphate kinase | |||
| 7695 | SprT family zinc-dependent metalloprotease | |||
| 7700 | R | Hpyfe114ORF7530P (95% identity) | HpyBT112ORF7705P | |
| 7705 | M | M.Hpy1139ORFWP (97% identity) | M.HpyBT112ORF7705P | |
| 7710 | S | S.HpySG24V (46% identity) | S.HpyBT112ORF7705P | |
| 7715 | FAD-dependent thymidylate synthase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 55 | 717 aa hypothetical protein | |||
| 60 | RM | HpyYN483ORFFP (85% identity) | HpyBT112ORF60P | |
| 65 | 180 aa hypothetical protein | |||
| 160 | outer membrane protein | |||
| 165 | R | Hpyfe71ORF135P (98% identity) | CCATC | HpyBT112ORF170P |
| 170 | M | M2.HpySG04III (100% identity) | CCATC | M1.HpyBT112ORF170P |
| 175 | M | M1.HpyT027III (99% identity) | CCATC | M2.HpyBT112ORF170P |
| 180 | LptF/LptG family permease | |||
| 305 | ComF family protein | |||
| 310 | RM | Hpyfe124ORF275P (98% identity) | CYANNNNNNTTC | HpyBT112ORF310P |
| 315 | S | S.HpySG07ORF6810P (95% identity) | CYANNNNNNNTRG | S.HpyBT112ORF310P |
| 320 | DNA polymerase I | |||
| 600 | UDP-N-acetylmuramate dehydrogenase | |||
| 605 | R | Hpyfe127ORF630P (99% identity) | GAATTC | HpyBT112ORF610P |
| 610 | M | M.HpySH010VII (100% identity) | GAATTC | M.HpyBT112ORF610P |
| 615 | glycosyltransferase family 8 protein | |||
| 1430 | serine O-acetyltransferase | |||
| 1435 | R | HpyGU1CORFTP (95% identity) | CATG | HpyBT112ORF1440P |
| 1440 | M | M.Hpyfe125ORF6085P (98% identity) | CATG | M.HpyBT112ORF1440P |
| 1445 | HAD family hydrolase | |||
| 1610 | purine-nucleoside phosphorylase | |||
| 1615 | R | HpyYN483ORFCP (97% identity) | TCNGA | HpyBT112ORF1620P |
| 1620 | M | M.Hpyfe58ORF1625P (99% identity) | TCNGA | M.HpyBT112ORF1620P |
| 1625 | Hop family adhesin HopQ | |||
| 1665 | carbon starvation CstA family protein | |||
| 1670 | R | HpySG13VIIP (99% identity) | CTRYAG | HpyBT112ORF1675P |
| 1675 | M | M.HpyL030VIII (99% identity) | CTRYAG | M.HpyBT112ORF1675P |
| 1680 | outer membrane beta-barrel protein HofH | |||
| 1910 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 1915 | M | M.HpyJA101XI (99% identity) | GCGC | M.HpyBT112ORF1915P |
| 1920 | 144 aa hypothetical protein | |||
| 2100 | Laminin subunit alpha-2 precursor | |||
| 2105 | R | HpyMKM5ORF1055P (99% identity) | TCNNGA | HpyBT112ORF2110P |
| 2110 | M | M.HpyYN483ORFVP (100% identity) | TCNNGA | M.HpyBT112ORF2110P |
| 2115 | acetyl-CoA carboxylase biotin carboxylase | |||
| 2775 | ATP-dependent helicase | |||
| 2780 | M | M.HpyKG10VIII (98% identity) | GTNNAC | M.HpyBT112ORF2780P |
| 2785 | R | Hpy271ORFAP (96% identity) | GTNNAC | HpyBT112ORF2780P |
| 2790 | flagellar hook protein FlgE | |||
| 2990 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 2995 | M | M.HpyML1ORFUP (94% identity) | GTAC | M.HpyBT112ORF2995P |
| 3000 | R | HpySG02XIP (98% identity) | GTAC | HpyBT112ORF2995P |
| 3005 | peptidoglycan DD-metalloendopeptidase Csd1 | |||
| 3850 | outer membrane protein | |||
| 3855 | RM | Hpy193ORFNP (90% identity) | HpyBT112ORF3855P | |
| 3860 | (Fe-S)-binding protein | |||
| 4520 | osmoprotection protein | |||
| 4525 | R | HpyIN7VIP (99% identity) | CGWCG | HpyBT112ORF4530P |
| 4530 | M | M.Hpy49ORF4230P (100% identity) | CGWCG | M.HpyBT112ORF4530P |
| 4535 | ABC transporter permease/substrate-binding | |||
| 4850 | catalase | |||
| 4855 | R | Hpy256ORFDP (98% identity) | ACGT | HpyBT112ORF4860P |
| 4860 | M | M.Hpy120ORF2335P (98% identity) | ACGT | M.HpyBT112ORF4860P |
| 4865 | GIY-YIG nuclease family protein | |||
| 4860 | DNA cytosine methyltransferase | |||
| 4865 | R | HpyQ35ORFJP (99% identity) | ACNGT | HpyBT112ORF4870P |
| 4870 | M | M.Hpyfe59ORF4845P (98% identity) | ACNGT | M.HpyBT112ORF4870P |
| 4875 | translational GTPase TypA | |||
| 4880 | glycosyltransferase family 9 protein | |||
| 4885 | M | M.Hpyfe70ORF4910P (97% identity) | ATTAAT | M.HpyBT112ORF4885P |
| 4890 | Hop family outer membrane protein HopJ/HopK | |||
| 5610 | 122 aa hypothetical protein | |||
| 5615 | M | M.Hpyfe59ORF5575P (99% identity) | CTNAG | M.HpyBT112ORF5615P |
| 5620 | R | HpyMA10IVP (98% identity) | CTNAG | HpyBT112ORF5615P |
| 5625 | polysaccharide deacetylase | |||
| 5855 | AAA family ATPase | |||
| 5860 | M | M.Hpyfe93ORF5875P (98% identity) | CCGG | M.HpyBT112ORF5860P |
| 5865 | R | Hpyfe63ORF5755P (97% identity) | CCGG | HpyBT112ORF5860P |
| 5870 | exodeoxyribonuclease VII large subunit | |||
| 6535 | ACP S-malonyltransferase | |||
| 6545 | R | Hpyfe52ORF6570P (94% identity) | GATC | HpyBT112ORF6550P |
| 6550 | M | M.HpyJSHR6ORF12640P (96% identity) | GATC | M.HpyBT112ORF6550P |
| 6555 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 7000 | DNA cytosine methyltransferase | |||
| 7005 | R | HpyK035IVP (95% identity) | CCTC | HpyBT112ORF7010P |
| 7010 | M | M2.Hpy4125ORFHP (98% identity) | CCTC | M1.HpyBT112ORF7010P |
| 7015 | M | M1.HpyK118V (100% identity) | CCTC | M2.HpyBT112ORF7010P |
| 7020 | agmatine deiminase | |||
| 7060 | S41 family peptidase | |||
| 7065 | R | HpyAR10VIP (96% identity) | GANTC | HpyBT112ORF7070P |
| 7070 | M | M.Hpyfe64ORF7055P (100% identity) | GANTC | M.HpyBT112ORF7070P |
| 7075 | N-6 DNA methylase | |||
| 7070 | DNA methyltransferase | |||
| 7075 | RM | Hpyfe55ORF6880P (92% identity) | HpyBT112ORF7075P | |
| 7080 | carboxylating nicotinate-nucleotide | |||
| 7600 | translation elongation factor Ts | |||
| 7605 | R | Hpyfe115ORF7705P (97% identity) | TGCA | HpyBT112ORF7610P |
| 7610 | M | M.Hpyfe54ORF7420P (98% identity) | TGCA | M.HpyBT112ORF7610P |
| 7615 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.Hpyfe48ORF40P (97% identity) | GWCAY | M.HpyBT112ORF40P |
| 50 | R | HpyTW04ORF7140P (97% identity) | GWCAY | HpyBT112ORF40P |
| 55 | 717 aa hypothetical protein | |||
| 670 | type III restriction endonuclease subunit R | |||
| 675 | R | HpyCHN6ORF6500P (94% identity) | CAAAC | HpyBT112ORF680P |
| 680 | M | M.Hpyfe120ORF630P (95% identity) | CAAAC | M.HpyBT112ORF680P |
| 685 | DNA/RNA non-specific endonuclease | |||
| 7130 | copper response regulator transcription factor | |||
| 7135 | M | M.HpyCHN2XVI (98% identity) | GGCAA | M.HpyBT112ORF7135P |
| 7140 | R | Hpyfe52ORF6880P (95% identity) | GGCAA | HpyBT112ORF7135P |
| 7145 | rod shape-determining protein MreC | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3035 | type I glutamate--ammonia ligase | |||
| 3040 | R | HpyNP04GmrSDP (80% identity) | HpyBT112GmrSDP | |
| 3045 | 50S ribosomal protein L9 | |||
| 3620 | tetratricopeptide repeat protein | |||
| 3625 | R | HpyOK304GmrSD2P (95% identity) | HpyBT112GmrSD2P | |
| 3630 | NAD(P)H-dependent oxidoreductase | |||