Helicobacter pylori BS27-2 |
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Putative Helicobacter pylori BS27-2 RM systems
Ref: Sripa,B. and Edwards,S.W. unpublished
REBASE ref # 37016
Complete sequence: 1,651,345 bp
GenBank #: CP122955
REBASE acronym: HpyBS272
Org_num: 68426
All begin QAP03_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 370 | LPP20 family lipoprotein | |||
| 375 | S | S.HpyBS271ORF7535P (100% identity) | GRNAANNNNNNNTTNYC | S.HpyBS272ORF385P |
| 380 | CAAX protease | |||
| 385 | M | M.HpyBS271ORF7535P (100% identity) | GRNAANNNNNNNTTNYC | M.HpyBS272ORF385P |
| 390 | R | HpyBS271ORF7535P (100% identity) | GRNAANNNNNNNTTNYC | HpyBS272ORF385P |
| 395 | SprT family zinc-dependent metalloprotease | |||
| 2895 | RNA degradosome polyphosphate kinase | |||
| 2905 | S | S.HpyBS271ORF5010P (100% identity) | CCANNNNNNTTT | S.HpyBS272ORF2910P |
| 2910 | M | M.HpyBS271ORF5010P (100% identity) | CCANNNNNNTTT | M.HpyBS272ORF2910P |
| 2915 | R | HpyBS271ORF5010P (100% identity) | CCANNNNNNTTT | HpyBS272ORF2910P |
| 2920 | motility associated factor glycosyltransferase | |||
| 4685 | outer membrane beta-barrel protein HofF | |||
| 4690 | S | S.HpyBS271ORF3230P (100% identity) | S.HpyBS272ORF4690P | |
| 4695 | heavy metal translocating P-type ATPase | |||
| 4970 | hydroxyethylthiazole kinase | |||
| 4975 | R | HpyBS271ORF2940P (100% identity) | HpyBS272ORFAP | |
| 4980 | S | S.HpyBS271ORF2940P (100% identity) | S.HpyBS272ORFAP | |
| 4985 | DNA cytosine methyltransferase | |||
| 4990 | HaeIII family restriction endonuclease | |||
| ??? | M | M.Hpy05124ORFDP (10% identity) | M1.HpyBS272ORFAP | |
| ??? | M | M.HpyC1119ORFMP (6% identity) | M2.HpyBS272ORFAP | |
| 5000 | COG2958 family protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 45 | type III restriction-modification system | |||
| 50 | RM | HpyBS271ORF7870P (100% identity) | HpyBS272ORF50P | |
| 55 | 187 aa hypothetical protein | |||
| 270 | ComF family protein | |||
| 275 | RM | HpyBS271ORF7645P (100% identity) | CYANNNNNNTTC | HpyBS272ORF275P |
| 280 | S | S1.HpyBS271ORF7645P (100% identity) | S1.HpyBS272ORF275P | |
| 285 | S | S2.HpyBS271ORF7645P (100% identity) | S2.HpyBS272ORF275P | |
| 290 | DNA polymerase I | |||
| 465 | 67 aa hypothetical protein | |||
| 470 | M | M.HpyBS271ORF7450P (100% identity) | TGCA | M.HpyBS272ORF470P |
| 475 | R | HpyBS271ORF7450P (100% identity) | TGCA | HpyBS272ORF470P |
| 480 | cytochrome c1 | |||
| 985 | agmatine/peptidylarginine deiminase | |||
| 990 | M | M2.HpyBS271ORF6925P (100% identity) | CCTC | M1.HpyBS272ORF990P |
| 995 | M | M1.HpyBS271ORF6925P (100% identity) | CCTC | M2.HpyBS272ORF990P |
| 1000 | R | HpyBS271ORF6925P (100% identity) | CCTC | HpyBS272ORF990P |
| 1005 | site-specific DNA-methyltransferase | |||
| 1000 | HNH endonuclease signature motif containing | |||
| 1005 | M | M.HpyKG9X (100% identity) | GTSAC | M.HpyBS272ORF1005P |
| 1010 | R | HpyR10XIP (100% identity) | GTSAC | HpyBS272ORF1005P |
| 1015 | sodium/proline symporter PutP | |||
| 1200 | HTH domain-containing protein | |||
| 1205 | M | M.HpyBS271ORF6710P (100% identity) | GATC | M.HpyBS272ORF1205P |
| 1210 | alpha-1,2-fucosyltransferase | |||
| 2020 | exodeoxyribonuclease VII large subunit | |||
| 2025 | M | M.HpyBS271ORF5895P (100% identity) | TCGA | M.HpyBS272ORF2025P |
| 2030 | 204 aa hypothetical protein | |||
| 2275 | polysaccharide deacetylase | |||
| 2280 | R | HpyBS271ORF5635P (100% identity) | CTNAG | HpyBS272ORF2285P |
| 2285 | M | M.HpyBS271ORF5635P (100% identity) | CTNAG | M.HpyBS272ORF2285P |
| 2290 | 125 aa hypothetical protein | |||
| 2990 | Hop family outer membrane protein HopJ/HopK | |||
| 2995 | M | M.HpyBS271ORF4925P (100% identity) | ATTAAT | M.HpyBS272ORF2995P |
| 3000 | glycosyltransferase family 9 protein | |||
| 3155 | 259 aa hypothetical protein | |||
| 3160 | M | M.HpyBS271ORF4760P (100% identity) | ACNGT | M.HpyBS272ORF3160P |
| 3165 | R | HpyBS271ORF4760P (100% identity) | ACNGT | HpyBS272ORF3160P |
| 3170 | DNA cytosine methyltransferase | |||
| 3165 | GIY-YIG nuclease family protein | |||
| 3170 | M | M.HpyBS271ORF4750P (100% identity) | ACGT | M.HpyBS272ORF3170P |
| 3175 | R | HpyBS271ORF4750P (100% identity) | ACGT | HpyBS272ORF3170P |
| 3180 | catalase | |||
| 3265 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 3270 | M | M.HpyBS271ORF4650P (100% identity) | GTAC | M.HpyBS272ORF3270P |
| 3275 | R | HpyBS271ORF4650P (100% identity) | GTAC | HpyBS272ORF3270P |
| 3280 | peptidoglycan DD-metalloendopeptidase Csd1 | |||
| 4095 | (Fe-S)-binding protein | |||
| 4100 | RM | HpyBS271ORF3820P (99% identity) | HpyBS272ORF4100P | |
| 4105 | outer membrane protein | |||
| 4185 | 3-5 exonuclease | |||
| 4190 | M | M.Hpyfe55ORF3835P (100% identity) | CCNNGG | M.HpyBS272ORF4190P |
| 4195 | R | HpyQ56ORFLP (100% identity) | CCNNGG | HpyBS272ORF4190P |
| 4200 | 3-5 exonuclease | |||
| 5255 | flagellar hook protein FlgE | |||
| 5260 | R | HpyBS271ORF2655P (100% identity) | GTNNAC | HpyBS272ORF5265P |
| 5265 | M | M.HpyBS271ORF2655P (100% identity) | GTNNAC | M.HpyBS272ORF5265P |
| 5270 | ATP-dependent helicase | |||
| 5945 | FkbM family methyltransferase | |||
| 5950 | M | M.HpyBS271ORF1970P (100% identity) | TCNNGA | M.HpyBS272ORF5950P |
| 5955 | R | HpyBS271ORF1970P (100% identity) | TCNNGA | HpyBS272ORF5950P |
| 5960 | Laminin subunit alpha-2 precursor | |||
| 6140 | 144 aa hypothetical protein | |||
| 6145 | M | M.HpyBS271ORF1775P (100% identity) | GCGC | M.HpyBS272ORF6145P |
| 6150 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 6595 | HAD family hydrolase | |||
| 6600 | M | M.HpyBS271ORF1320P (100% identity) | CATG | M.HpyBS272ORF6600P |
| 6605 | integrase | |||
| 7465 | DNA methyltransferase | |||
| 7470 | R | HpyBS271ORF445P (100% identity) | GANTC | HpyBS272ORF7475P |
| 7475 | M | M.HpyBS271ORF445P (100% identity) | GANTC | M.HpyBS272ORF7475P |
| 7480 | DNA methyltransferase | |||
| 7480 | DNA methyltransferase | |||
| 7485 | RM | HpyBS271ORF430P (94% identity) | HpyBS272ORF7485P | |
| 7490 | carboxylating nicotinate-nucleotide | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| 40 | M | M.HpyBS271ORF7880P (100% identity) | M.HpyBS272ORF40P | |
| 45 | R | HpyBS271ORF7880P (100% identity) | HpyBS272ORF40P | |
| 50 | Eco57I restriction-modification methylase | |||
| 7540 | copper response regulator transcription factor | |||
| ??? | M | M.HpyBS271ORF370P (100% identity) | M.HpyBS272ORF7545P | |
| 7555 | R | HpyBS271ORF370P (99% identity) | HpyBS272ORF7545P | |
| 7560 | rod shape-determining protein MreC | |||
| 7605 | DNA/RNA non-specific endonuclease | |||
| 7610 | M | M.HpyBS271ORF310P (100% identity) | M.HpyBS272ORF7610P | |
| 7615 | R | HpyBS271ORF310P (96% identity) | HpyBS272ORF7610P | |
| 7620 | biotin synthase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3310 | type I glutamate--ammonia ligase | |||
| 3315 | R | HpyBS271GmrSDP (100% identity) | HpyBS272GmrSDP | |
| 3320 | 50S ribosomal protein L9 | |||
| 3900 | tetratricopeptide repeat protein | |||
| 3905 | R | HpyBS271GmrSD2P (100% identity) | HpyBS272GmrSD2P | |
| 3910 | NAD(P)H-dependent oxidoreductase | |||