Helicobacter pylori BS06 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Helicobacter pylori BS06 RM systems
Ref: Sripa,B. and Edwards,S.W. unpublished
REBASE ref # 37016
Complete sequence: 1,607,314 bp
GenBank #: CP122954
REBASE acronym: HpyBS06
Org_num: 68420
All begin QAP06_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 585 | formyltetrahydrofolate deformylase | |||
| 590 | S | S.Hpy1768ORFPP (80% identity) | S.HpyBS06ORF590P | |
| 595 | 90 aa hypothetical protein | |||
| 4685 | outer membrane beta-barrel protein HofF | |||
| 4690 | S | S.HpySP301ORF3025P (93% identity) | S.HpyBS06ORF4690P | |
| 4695 | heavy metal translocating P-type ATPase | |||
| 4970 | hydroxyethylthiazole kinase | |||
| 4975 | R | HpyNP03ORF2285P (94% identity) | CCANNNNNNRTC | HpyBS06ORF4985P |
| 4980 | S | S.HpyNCI22ORFWP (95% identity) | CCANNNNNNRTC | S.HpyBS06ORF4985P |
| 4985 | M | M.HpyK042XVI (95% identity) | CCANNNNNNRTC | M.HpyBS06ORF4985P |
| 4990 | DNA cytosine methyltransferase | |||
| 5265 | type I restriction endonuclease | |||
| 5270 | R | HpyP30ORFPP (82% identity) | CTANNNNNNTC | HpyBS06ORF5275P |
| 5275 | M | M.HpyF014ORF2235P (95% identity) | CTANNNNNNTC | M.HpyBS06ORF5275P |
| 5280 | S | S.HpyKH28ORFAP (98% identity) | CTANNNNNNTC | S.HpyBS06ORF5275P |
| 5290 | RNA degradosome polyphosphate kinase | |||
| 7690 | SprT family zinc-dependent metalloprotease | |||
| 7695 | R | HpyT022IVP (95% identity) | CNNTAYNNNNNTTTA | HpyBS06ORF7700P |
| 7700 | M | M.Hpy2099ORF6990P (93% identity) | CNNTAYNNNNNTTTA | M.HpyBS06ORF7700P |
| 7705 | S | S.Hpyoh1ORF1965P (96% identity) | CNNTAYNNNNNTTTA | S.HpyBS06ORF7700P |
| 7710 | FAD-dependent thymidylate synthase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 50 | type III restriction-modification system | |||
| 55 | RM | HpyBG7ORF7510P (86% identity) | HpyBS06ORF55P | |
| 60 | transcription termination factor NusA | |||
| 125 | outer membrane protein | |||
| 130 | R | HpyMM03IVP (96% identity) | CCATC | HpyBS06ORF135P |
| 135 | M | M2.HpySW27VII (98% identity) | CCATC | M1.HpyBS06ORF135P |
| 140 | M | M1.Hpy49ORF7430P (99% identity) | CCATC | M2.HpyBS06ORF135P |
| 145 | LptF/LptG family permease | |||
| 270 | ComF family protein | |||
| 275 | R | HpyMM08VIIIP (98% identity) | GGATG | HpyBS06ORF280P |
| 280 | M | M2.HpyISR3X (100% identity) | GGATG | M1.HpyBS06ORF280P |
| 285 | M | M2.HpySP606IX (100% identity) | GGATG | M2.HpyBS06ORF280P |
| 290 | C | C.HpyU409XP (100% identity) | C.HpyBS06ORF280P | |
| 295 | type II restriction endonuclease | |||
| 660 | UDP-N-acetylmuramate dehydrogenase | |||
| 665 | M | M.HpySP405ORF7780P (99% identity) | M.HpyBS06ORF665P | |
| 670 | R | HpyU005ORF6500P (98% identity) | HpyBS06ORF665P | |
| 675 | glycosyltransferase family 8 protein | |||
| 805 | site-specific DNA-methyltransferase | |||
| 810 | M | M2.Hpyfe68ORF6885P (99% identity) | GAAGA | M1.HpyBS06ORF810P |
| 815 | M | M2.HpyKH37ORFXP (99% identity) | GAAGA | M2.HpyBS06ORF810P |
| 820 | R | HpyKH12ORFZP (97% identity) | GAAGA | HpyBS06ORF810P |
| 825 | copper response regulator transcription factor | |||
| 875 | carboxylating nicotinate-nucleotide | |||
| ??? | RM | HpyK262ORF7560P (77% identity) | HpyBS06ORF880P | |
| 890 | IS607 family transposase | |||
| 905 | DNA methyltransferase | |||
| 910 | M | M.HpyMM04VII (99% identity) | GANTC | M.HpyBS06ORF910P |
| 915 | R | HpyG008IVP (96% identity) | GANTC | HpyBS06ORF910P |
| 920 | DNA methyltransferase | |||
| 1600 | serine O-acetyltransferase | |||
| 1605 | R | HpyID10IP (98% identity) | CATG | HpyBS06ORF1610P |
| 1610 | M | M.HpyCOL203I (96% identity) | CATG | M.HpyBS06ORF1610P |
| 1615 | HAD family hydrolase | |||
| 2215 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 2220 | M | M.HpyI008XVI (97% identity) | GCGC | M.HpyBS06ORF2220P |
| 2225 | 144 aa hypothetical protein | |||
| 2405 | Laminin subunit alpha-2 precursor | |||
| 2410 | R | HpyNP13XIIP (97% identity) | TCNNGA | HpyBS06ORF2415P |
| 2415 | M | M.HpyMM12XII (99% identity) | TCNNGA | M.HpyBS06ORF2415P |
| 2420 | methyltransferase | |||
| 3140 | 418 aa hypothetical protein | |||
| 3145 | RM | HpyG036ORF3135P (80% identity) | HpyBS06ORF3145P | |
| 3150 | (Fe-S)-binding protein | |||
| 3965 | peptidoglycan DD-metalloendopeptidase Csd1 | |||
| 3970 | R | HpyL010XP (97% identity) | GTAC | HpyBS06ORF3975P |
| 3975 | M | M.HpyMM01XII (97% identity) | GTAC | M.HpyBS06ORF3975P |
| 3980 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 4165 | flagellar hook protein FlgE | |||
| 4170 | R | HpyC004VIIIP (97% identity) | GTNNAC | HpyBS06ORF4175P |
| 4175 | M | M.HpyMM01XIII (97% identity) | GTNNAC | M.HpyBS06ORF4175P |
| 4180 | ATP-dependent helicase | |||
| 4985 | type I restriction-modification system subunit | |||
| 4990 | M | M.Hpyfe85ORF2990P (99% identity) | GGCC | M.HpyBS06ORF4990P |
| 4995 | R | HpyLI25ORF4045P (97% identity) | GGCC | HpyBS06ORF4990P |
| 5000 | phosphatase PAP2 family protein | |||
| 5150 | 60 aa hypothetical protein | |||
| 5155 | R | HpyLI25ORF2230P (96% identity) | ACGT | HpyBS06ORF5160P |
| 5160 | M | M.Hpy52ORF465P (98% identity) | ACGT | M.HpyBS06ORF5160P |
| 5165 | GIY-YIG nuclease family protein | |||
| 5160 | DNA cytosine methyltransferase | |||
| 5165 | R | Hpy13AEK8ORFQP (99% identity) | ACNGT | HpyBS06ORF5170P |
| 5170 | M | M.HpyQ35ORFJP (99% identity) | ACNGT | M.HpyBS06ORF5170P |
| 5175 | translational GTPase TypA | |||
| 5180 | glycosyltransferase family 9 protein | |||
| 5185 | M | M.HpyKH36ORFB1P (97% identity) | ATTAAT | M.HpyBS06ORF5185P |
| 5190 | Hop family outer membrane protein HopJ/HopK | |||
| 5900 | 124 aa hypothetical protein | |||
| 5905 | M | M.HpyU009IV (99% identity) | CTNAG | M.HpyBS06ORF5905P |
| 5910 | R | HpyHI (96% identity) | CTNAG | HpyBS06ORF5905P |
| 5915 | polysaccharide deacetylase | |||
| 6145 | AAA family ATPase | |||
| 6150 | M | M.HpySP104III (100% identity) | CCGG | M.HpyBS06ORF6150P |
| 6155 | R | HpyK043IVP (97% identity) | CCGG | HpyBS06ORF6150P |
| 6160 | 204 aa hypothetical protein | |||
| 6160 | 204 aa hypothetical protein | |||
| 6165 | M | M.HpyP005XIII (96% identity) | TCGA | M.HpyBS06ORF6165P |
| 6170 | exodeoxyribonuclease VII large subunit | |||
| 6860 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 6865 | M | M.HpyPE136IX (97% identity) | GATC | M.HpyBS06ORF6865P |
| 6870 | R | HpyBG8IVP (95% identity) | GATC | HpyBS06ORF6865P |
| 6880 | ACP S-malonyltransferase | |||
| 7585 | DUF5343 domain-containing protein | |||
| 7590 | M | M.HpyKH23ORFDP (49% identity) | M.HpyBS06ORF7590P | |
| 7595 | type II restriction endonuclease | |||
| 7590 | DNA cytosine methyltransferase | |||
| 7595 | R | HpySP701IXP (99% identity) | TGCA | HpyBS06ORF7600P |
| 7600 | M | M.HpySP06V (98% identity) | TGCA | M.HpyBS06ORF7600P |
| 7605 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.Hpyfe86ORF40P (93% identity) | M.HpyBS06ORF40P | |
| 50 | R | HpyV004ORF7125P (94% identity) | HpyBS06ORF40P | |
| 55 | class I SAM-dependent DNA methyltransferase | |||
| 730 | biotin synthase | |||
| 735 | R | HpyKH37ORFNP (92% identity) | HpyBS06ORF740P | |
| 740 | M | M.HpyMA02ORF6635P (95% identity) | M.HpyBS06ORF740P | |
| 745 | DNA/RNA non-specific endonuclease | |||
| 795 | rod shape-determining protein MreC | |||
| 800 | R | HpyP104ORF6900P (91% identity) | GGCAA | HpyBS06ORF805P |
| 805 | M | M.HpyMM03XVII (95% identity) | GGCAA | M.HpyBS06ORF805P |
| 810 | site-specific DNA-methyltransferase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3335 | NAD(P)H-dependent oxidoreductase | |||
| 3340 | R | HpyTW10GmrSD2P (93% identity) | HpyBS06GmrSD2P | |
| 3345 | tetratricopeptide repeat protein | |||
| 3920 | 50S ribosomal protein L9 | |||
| 3925 | R | HpyPO107GmrSDP (80% identity) | HpyBS06GmrSDP | |
| 3930 | type I glutamate--ammonia ligase | |||