Helicobacter pylori BS30 |
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Putative Helicobacter pylori BS30 RM systems
Ref: Sripa,B. and Edwards,S.W. unpublished
REBASE ref # 37016
Complete sequence: 1,612,101 bp
GenBank #: CP122953
REBASE acronym: HpyBS30
Org_num: 68428
All begin PH204_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4080 | outer membrane beta-barrel protein HofF | |||
| 4085 | S | S.HpyV001XV (92% identity) | S.HpyBS30ORF4085P | |
| 4090 | heavy metal translocating P-type ATPase | |||
| 4365 | hydroxyethylthiazole kinase | |||
| 4370 | R | HpySW18ORF2470P (94% identity) | HpyBS30ORF4380P | |
| 4375 | S | S.HpySP403ORF3790P (46% identity) | S.HpyBS30ORF4380P | |
| 4380 | M | M.HpyID7XVII (91% identity) | M.HpyBS30ORF4380P | |
| 4385 | type I restriction endonuclease | |||
| 4655 | motility associated factor glycosyltransferase | |||
| 4660 | R | HpySW12ORF2295P (88% identity) | CACNNNNNTAA | HpyBS30ORF4665P |
| 4665 | M | M.HpySP13ORF2180P (95% identity) | CACNNNNNTAA | M.HpyBS30ORF4665P |
| 4670 | S | S.HpyGE18ORF4195P (97% identity) | CACNNNNNTAA | S.HpyBS30ORF4665P |
| 4680 | RNA degradosome polyphosphate kinase | |||
| 7690 | SprT family zinc-dependent metalloprotease | |||
| 7695 | R | HpyMM06ORF7120P (94% identity) | HpyBS30ORF7700P | |
| 7700 | M | M.HpyCHN6V (67% identity) | M.HpyBS30ORF7700P | |
| 7705 | formyltransferase family protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 55 | 713 aa hypothetical protein | |||
| 60 | RM | HpyBS21ORF55P (89% identity) | HpyBS30ORF60P | |
| 65 | transcription termination factor NusA | |||
| 130 | outer membrane protein | |||
| 135 | R | HpyMA17IXP (97% identity) | CCATC | HpyBS30ORF140P |
| 140 | M | M1.Hpyfe86ORF150P (99% identity) | CCATC | M1.HpyBS30ORF140P |
| 145 | M | M1.HpyGT7III (98% identity) | CCATC | M2.HpyBS30ORF140P |
| 150 | LptF/LptG family permease | |||
| 275 | ComF family protein | |||
| 280 | RM | HpyI020ORF7020P (97% identity) | CYANNNNNNTGA | HpyBS30ORF280P |
| 285 | S | S.HpySP503ORF7195P (93% identity) | S.HpyBS30ORF280P | |
| 290 | DNA polymerase I | |||
| 1590 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 1595 | M | M.Hpyfe38ORF1860P (99% identity) | GCGC | M.HpyBS30ORF1595P |
| 1600 | 144 aa hypothetical protein | |||
| 1775 | Laminin subunit alpha-2 precursor | |||
| 1780 | R | HpyUM085ORF7990P (97% identity) | TCNNGA | HpyBS30ORF1785P |
| 1785 | M | M.HpyC113II (98% identity) | TCNNGA | M.HpyBS30ORF1785P |
| 1790 | FkbM family methyltransferase | |||
| 2110 | 694 aa hypothetical protein | |||
| 2115 | M | M.HpyMM01ORF4830P (92% identity) | M.HpyBS30ORF2115P | |
| 2120 | DNA adenine methylase | |||
| 2670 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 2675 | M | M.HpyKH32ORFHP (93% identity) | GTAC | M.HpyBS30ORF2675P |
| 2680 | R | HpyJA109VIIIP (95% identity) | GTAC | HpyBS30ORF2675P |
| 2685 | peptidoglycan DD-metalloendopeptidase Csd1 | |||
| 3580 | 3-5 exonuclease | |||
| 3585 | M | M.Hpyfe62ORF3865P (99% identity) | CCNNGG | M.HpyBS30ORF3585P |
| 3590 | R | HpyMM01VIP (100% identity) | CCNNGG | HpyBS30ORF3585P |
| 3595 | 3-5 exonuclease | |||
| 4550 | catalase | |||
| 4555 | R | Hpyfe92ORF5040P (99% identity) | ACGT | HpyBS30ORF4560P |
| 4560 | M | M.HpyKH3ORFC1P (96% identity) | ACGT | M.HpyBS30ORF4560P |
| 4565 | GIY-YIG nuclease family protein | |||
| 4560 | DNA cytosine methyltransferase | |||
| 4565 | R | HpyPU001IIP (100% identity) | ACNGT | HpyBS30ORF4570P |
| 4570 | M | M.HpySW25IV (98% identity) | ACNGT | M.HpyBS30ORF4570P |
| 4575 | translational GTPase TypA | |||
| 4580 | glycosyltransferase family 9 protein | |||
| 4585 | M | M.HpyMA18V (96% identity) | ATTAAT | M.HpyBS30ORF4585P |
| 4590 | Hop family outer membrane protein HopJ/HopK | |||
| 5095 | group I intron-associated PD-(D/E)XK | |||
| 5100 | M | M.Hpybs1ORFFP (86% identity) | GCNGC | M.HpyBS30ORF5100P |
| 5105 | translation elongation factor 4 | |||
| 5510 | AAA family ATPase | |||
| 5515 | M | M.Hpyfe75ORF5835P (98% identity) | CCGG | M.HpyBS30ORF5515P |
| 5520 | R | HpyIN1VP (96% identity) | CCGG | HpyBS30ORF5515P |
| 5525 | 152 aa hypothetical protein | |||
| 5525 | 152 aa hypothetical protein | |||
| 5530 | M | M.Hpy3192ORF2205P (96% identity) | TCGA | M.HpyBS30ORF5530P |
| 5535 | exodeoxyribonuclease VII large subunit | |||
| 6215 | alpha-1,2-fucosyltransferase | |||
| 6220 | M | M.Hpy017V (95% identity) | GATC | M.HpyBS30ORF6220P |
| 6225 | HTH domain-containing protein | |||
| 6410 | sodium/proline symporter PutP | |||
| 6415 | R | HpyMM09XIIP (99% identity) | GTSAC | HpyBS30ORF6420P |
| 6420 | M | M.HpySP315XI (99% identity) | GTSAC | M.HpyBS30ORF6420P |
| 6425 | HNH endonuclease | |||
| 6420 | site-specific DNA-methyltransferase | |||
| 6425 | R | HpyIN10IVP (94% identity) | HpyBS30ORF6430P | |
| 6430 | M | M2.HpyUM023ORF1910P (96% identity) | M1.HpyBS30ORF6430P | |
| 6435 | M | M1.HpyID10ORF250P (97% identity) | CCTC | M2.HpyBS30ORF6430P |
| 6440 | agmatine/peptidylarginine deiminase | |||
| 6640 | HAD family hydrolase | |||
| 6645 | M | M.HpyH026I (96% identity) | CATG | M.HpyBS30ORF6645P |
| 6650 | R | HpyMM03IP (96% identity) | CATG | HpyBS30ORF6645P |
| 6655 | serine O-acetyltransferase | |||
| 7360 | 383 aa hypothetical protein | |||
| 7365 | RM | HpyF010ORF6285P (66% identity) | HpyBS30ORF7365P | |
| 7370 | carboxylating nicotinate-nucleotide | |||
| 7600 | anthranilate synthase component I | |||
| 7605 | R | HpyFD535ORFPP (99% identity) | TGCA | HpyBS30ORF7610P |
| 7610 | M | M.HpySW17VII (97% identity) | TGCA | M.HpyBS30ORF7610P |
| 7615 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.HpyUM038ORF805P (96% identity) | M.HpyBS30ORF40P | |
| 50 | R | Hpyfe32ORF40P (92% identity) | HpyBS30ORF40P | |
| 55 | 713 aa hypothetical protein | |||
| 7420 | copper response regulator transcription factor | |||
| ??? | M | M.HpySP209ORF6675P (94% identity) | M.HpyBS30ORF7425P | |
| 7435 | R | HpyK047ORF205P (91% identity) | HpyBS30ORF7425P | |
| 7440 | rod shape-determining protein MreC | |||
| 7485 | DNA/RNA non-specific endonuclease | |||
| 7490 | M | M.HpyGE9ORF330P (95% identity) | M.HpyBS30ORF7490P | |
| 7495 | R | HpyID6XXIP (88% identity) | HpyBS30ORF7490P | |
| 7500 | biotin synthase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2715 | type I glutamate--ammonia ligase | |||
| 2720 | R | Hpy66GmrSDP (81% identity) | HpyBS30GmrSDP | |
| 2725 | 50S ribosomal protein L9 | |||
| 3290 | tetratricopeptide repeat protein | |||
| 3295 | R | HpyU101GmrSD2P (92% identity) | HpyBS30GmrSD2P | |
| 3300 | NAD(P)H-dependent oxidoreductase | |||