Helicobacter pylori BS28-1 |
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Putative Helicobacter pylori BS28-1 RM systems
Ref: Sripa,B. and Edwards,S.W. unpublished
REBASE ref # 37016
Complete sequence: 1,617,424 bp
GenBank #: CP122950
REBASE acronym: HpyBS281
Org_num: 68427
All begin QAP01_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 3235 | DNA cytosine methyltransferase | |||
| 3240 | M | M.HpyUBN18ORFCP (90% identity) | AAGNNNNNNTAG | M.HpyBS281ORF3240P |
| 3245 | S | S.HpyJO7XVII (94% identity) | AAGNNNNNNTAG | S.HpyBS281ORF3240P |
| 3250 | R | HpyKH44ORFNP (94% identity) | AAGNNNNNNTAG | HpyBS281ORF3240P |
| 3255 | hydroxyethylthiazole kinase | |||
| 5155 | type I restriction endonuclease | |||
| 5160 | R | HpyI023ORF2160P (66% identity) | HpyBS281ORF5165P | |
| 5165 | M | M.HpySW07ORF2140P (95% identity) | M.HpyBS281ORF5165P | |
| 5170 | S | S.HpyTW18ORF2360P (95% identity) | S.HpyBS281ORF5165P | |
| 5180 | RNA degradosome polyphosphate kinase | |||
| 7665 | SprT family zinc-dependent metalloprotease | |||
| 7670 | R | HpyL018ORF7450P (94% identity) | HpyBS281ORF7675P | |
| 7675 | M | M.HpyU115IV (95% identity) | M.HpyBS281ORF7675P | |
| 7680 | CAAX protease | |||
| 7685 | S | S.HpyLI26XV (95% identity) | S.HpyBS281ORF7675P | |
| 7690 | FAD-dependent thymidylate synthase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 50 | type III restriction-modification system | |||
| 55 | RM | HpyBGR1ORF7135P (90% identity) | HpyBS281ORF55P | |
| 60 | 187 aa hypothetical protein | |||
| 130 | outer membrane protein | |||
| 135 | R | HpyI017VP (97% identity) | CCATC | HpyBS281ORF140P |
| 140 | M | M2.HpyTW20VI (99% identity) | CCATC | M1.HpyBS281ORF140P |
| 145 | M | M1.HpyT023IV (99% identity) | CCATC | M2.HpyBS281ORF140P |
| 150 | LptF/LptG family permease | |||
| 275 | ComF family protein | |||
| 280 | RM | HpyID8ORF6865P (98% identity) | CAANNNNNNTTG | HpyBS281ORF280P |
| 285 | S | S.HpyPE104ORF7285P (94% identity) | S.HpyBS281ORF280P | |
| 290 | DNA polymerase I | |||
| 335 | addiction module antidote protein | |||
| 340 | M | M2.HpyAR4ORF6720P (98% identity) | M1.HpyBS281ORF340P | |
| 345 | M | M2.HpySW08ORF7490P (99% identity) | M2.HpyBS281ORF340P | |
| 350 | R | HpyID10ORF6905P (90% identity) | HpyBS281ORF340P | |
| 355 | cytochrome-c peroxidase | |||
| 580 | UDP-N-acetylmuramate dehydrogenase | |||
| ??? | R | HpySP709ORF6945P (96% identity) | GAATTC | HpyBS281ORF590P |
| 590 | M | M.HpyME07ORF6485P (97% identity) | GAATTC | M.HpyBS281ORF590P |
| 595 | glycosyltransferase family 8 protein | |||
| 835 | carboxylating nicotinate-nucleotide | |||
| 840 | RM | HpyF226ORFJP (87% identity) | HpyBS281ORF840P | |
| 845 | S41 family peptidase | |||
| 1180 | DNA methyltransferase | |||
| 1185 | R | HpyGE15ORF6555P (100% identity) | GATATC | HpyBS281ORF1190P |
| 1190 | M | M.HpyUBN18ORFYP (99% identity) | GATATC | M.HpyBS281ORF1190P |
| 1195 | glycosyltransferase family 9 protein | |||
| 1580 | serine O-acetyltransferase | |||
| 1585 | R | HpyFD703ORF6460P (93% identity) | CATG | HpyBS281ORF1590P |
| 1590 | M | M.HpyUBN18ORFTP (98% identity) | CATG | M.HpyBS281ORF1590P |
| 1595 | HAD family hydrolase | |||
| 1760 | purine-nucleoside phosphorylase | |||
| 1765 | R | Hpyfe93ORF1580P (100% identity) | TCNGA | HpyBS281ORF1770P |
| 1770 | M | M.HpySW06II (100% identity) | TCNGA | M.HpyBS281ORF1770P |
| 1775 | purine-nucleoside phosphorylase | |||
| 2055 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 2060 | M | M.HpyBS22ORF1875P (99% identity) | GCGC | M.HpyBS281ORF2060P |
| 2065 | 144 aa hypothetical protein | |||
| 2240 | Laminin subunit alpha-2 precursor | |||
| 2245 | R | HpyK110ORF1170P (97% identity) | TCNNGA | HpyBS281ORF2250P |
| 2250 | M | M.HpyP005XIV (98% identity) | TCNNGA | M.HpyBS281ORF2250P |
| 2255 | FkbM family methyltransferase | |||
| 2600 | 99 aa hypothetical protein | |||
| 2605 | M | M.HpyBG2ORF4570P (69% identity) | M.HpyBS281ORF2605P | |
| 2610 | DNA adenine methylase | |||
| 2950 | ATP-dependent helicase | |||
| 2955 | M | M.HpyBS31ORF5195P (97% identity) | GTNNAC | M.HpyBS281ORF2955P |
| 2960 | R | HpyMA10XIP (98% identity) | GTNNAC | HpyBS281ORF2955P |
| 2965 | flagellar hook protein FlgE | |||
| 3225 | phosphatase PAP2 family protein | |||
| 3230 | R | HpyLI25ORF4045P (98% identity) | GGCC | HpyBS281ORF3235P |
| 3235 | M | M.HpyU407ORF2255P (99% identity) | GGCC | M.HpyBS281ORF3235P |
| 3240 | type I restriction-modification system subunit | |||
| 4115 | outer membrane protein | |||
| 4120 | RM | Hpyfe38ORF3880P (84% identity) | HpyBS281ORF4120P | |
| 4125 | (Fe-S)-binding protein | |||
| 4930 | peptidoglycan DD-metalloendopeptidase Csd1 | |||
| 4935 | R | HpyK154ORF3410P (94% identity) | GTAC | HpyBS281ORF4940P |
| 4940 | M | M.HpyT001VII (98% identity) | GTAC | M.HpyBS281ORF4940P |
| 4945 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 5035 | DNA (cytosine-5-)-methyltransferase | |||
| 5040 | R | HpyMM03ORF2340P (97% identity) | ACGT | HpyBS281ORF5045P |
| ??? | M | M.HpyL032ORF2395P (98% identity) | ACGT | M.HpyBS281ORF5045P |
| 5055 | GIY-YIG nuclease family protein | |||
| 5050 | DNA cytosine methyltransferase | |||
| 5055 | R | HpySP312IIP (100% identity) | ACNGT | HpyBS281ORF5060P |
| 5060 | M | M.HpyIS10II (98% identity) | ACNGT | M.HpyBS281ORF5060P |
| 5065 | translational GTPase TypA | |||
| 5070 | glycosyltransferase family 9 protein | |||
| 5075 | M | M.HpyLI21III (97% identity) | ATTAAT | M.HpyBS281ORF5075P |
| 5080 | Hop family outer membrane protein HopJ/HopK | |||
| 6020 | AAA family ATPase | |||
| 6025 | M | M.HpyKH7ORFPP (99% identity) | CCGG | M.HpyBS281ORF6025P |
| ??? | R | HpyUBN18ORFB1P (99% identity) | CCGG | HpyBS281ORF6025P |
| 6035 | 204 aa hypothetical protein | |||
| 6850 | alpha-1,2-fucosyltransferase | |||
| 6855 | M | M.HpyU431VII (94% identity) | M.HpyBS281ORF6855P | |
| 6860 | HTH domain-containing protein | |||
| 7045 | sodium/proline symporter PutP | |||
| 7050 | M | M.HpyHK840ORFHP (99% identity) | CCTTC | M.HpyBS281ORF7050P |
| 7055 | R | HpyF007XIVP (66% identity) | CCTTC | HpyBS281ORF7050P |
| 7060 | HNH endonuclease | |||
| 7055 | restriction endonuclease | |||
| 7060 | R | HpyUM023ORF1910P (89% identity) | CCTC | HpyBS281ORF7065P |
| 7065 | M | M2.HpyMA19VIP (98% identity) | CCTC | M1.HpyBS281ORF7065P |
| 7070 | M | M1.HpyPE136VI (99% identity) | CCTC | M2.HpyBS281ORF7065P |
| 7075 | agmatine/peptidylarginine deiminase | |||
| 7580 | translation elongation factor Ts | |||
| 7585 | R | HpyPO108XIP (99% identity) | TGCA | HpyBS281ORF7590P |
| 7590 | M | M.HpyU115IX (98% identity) | TGCA | M.HpyBS281ORF7590P |
| 7595 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| 40 | M | M.Hpyfe32ORF40P (68% identity) | M.HpyBS281ORF40AP | |
| 45 | M | M.HpyID7ORF7105P (28% identity) | M.HpyBS281ORF40BP | |
| 50 | R | HpyLI23ORF7460P (94% identity) | HpyBS281ORF40P | |
| 55 | Eco57I restriction-modification methylase | |||
| 705 | type III restriction endonuclease subunit R | |||
| 710 | R | HpySP607ORF6705P (88% identity) | HpyBS281ORF715P | |
| 715 | M | M.HpyDO6ORF7340P (95% identity) | M.HpyBS281ORF715P | |
| 720 | DNA/RNA non-specific endonuclease | |||
| 765 | rod shape-determining protein MreC | |||
| 770 | R | Hpyfe79ORF7170P (90% identity) | HpyBS281ORF775P | |
| ??? | M | M.HpyAbXVIIP (92% identity) | M.HpyBS281ORF775P | |
| 785 | copper response regulator transcription factor | |||
| 4480 | 54 aa hypothetical protein | |||
| 4485 | M | M.HpyKH37ORFRP (93% identity) | M.HpyBS281ORF4485P | |
| 4490 | R | HpyID10ORF2900P (96% identity) | HpyBS281ORF4485P | |
| 4495 | 2-oxoacid:acceptor oxidoreductase family | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4310 | NAD(P)H-dependent oxidoreductase | |||
| 4315 | R | HpySP104GmrSD2P (93% identity) | HpyBS281GmrSDP | |
| 4320 | tetratricopeptide repeat protein | |||
| 4890 | 50S ribosomal protein L9 | |||
| 4895 | R | HpyH025GmrSDP (86% identity) | HpyBS281GmrSD2P | |
| 4900 | type I glutamate--ammonia ligase | |||