Helicobacter pylori BS27-1 |
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Putative Helicobacter pylori BS27-1 RM systems
Ref: Sripa,B. and Edwards,S.W. unpublished
REBASE ref # 37016
Complete sequence: 1,651,320 bp
GenBank #: CP122952
REBASE acronym: HpyBS271
Org_num: 68425
All begin QAP05_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2935 | DNA cytosine methyltransferase | |||
| 2940 | S | S.HpyBS272ORFAP (100% identity) | S.HpyBS271ORF2940P | |
| 2945 | R | HpyBS272ORFAP (100% identity) | HpyBS271ORF2940P | |
| 2950 | hydroxyethylthiazole kinase | |||
| 3225 | heavy metal translocating P-type ATPase | |||
| 3230 | S | S.HpyBS272ORF4690P (100% identity) | S.HpyBS271ORF3230P | |
| 3235 | outer membrane beta-barrel protein HofF | |||
| 5000 | motility associated factor glycosyltransferase | |||
| 5005 | R | HpyBS272ORF2910P (100% identity) | CCANNNNNNTTT | HpyBS271ORF5010P |
| 5010 | M | M.HpyBS272ORF2910P (100% identity) | CCANNNNNNTTT | M.HpyBS271ORF5010P |
| 5015 | S | S.HpyBS272ORF2910P (100% identity) | CCANNNNNNTTT | S.HpyBS271ORF5010P |
| 5025 | RNA degradosome polyphosphate kinase | |||
| 7525 | SprT family zinc-dependent metalloprotease | |||
| 7530 | R | HpyBS272ORF385P (100% identity) | GRNAANNNNNNNTTNYC | HpyBS271ORF7535P |
| 7535 | M | M.HpyBS272ORF385P (100% identity) | GRNAANNNNNNNTTNYC | M.HpyBS271ORF7535P |
| 7540 | CAAX protease | |||
| 7545 | S | S.HpyBS272ORF385P (100% identity) | GRNAANNNNNNNTTNYC | S.HpyBS271ORF7535P |
| 7550 | LPP20 family lipoprotein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 425 | carboxylating nicotinate-nucleotide | |||
| ??? | RM | HpyBS272ORF7485P (94% identity) | HpyBS271ORF430P | |
| 445 | DNA methyltransferase | |||
| 440 | DNA methyltransferase | |||
| 445 | M | M.HpyBS272ORF7475P (100% identity) | GANTC | M.HpyBS271ORF445P |
| 450 | R | HpyBS272ORF7475P (100% identity) | GANTC | HpyBS271ORF445P |
| 455 | DNA methyltransferase | |||
| 1315 | integrase | |||
| 1320 | M | M.HpyBS272ORF6600P (100% identity) | CATG | M.HpyBS271ORF1320P |
| 1325 | HAD family hydrolase | |||
| 1770 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 1775 | M | M.HpyBS272ORF6145P (100% identity) | GCGC | M.HpyBS271ORF1775P |
| 1780 | 144 aa hypothetical protein | |||
| 1960 | Laminin subunit alpha-2 precursor | |||
| 1965 | R | HpyBS272ORF5950P (100% identity) | TCNNGA | HpyBS271ORF1970P |
| 1970 | M | M.HpyBS272ORF5950P (100% identity) | TCNNGA | M.HpyBS271ORF1970P |
| 1975 | FkbM family methyltransferase | |||
| 2650 | ATP-dependent helicase | |||
| 2655 | M | M.HpyBS272ORF5265P (100% identity) | GTNNAC | M.HpyBS271ORF2655P |
| 2660 | R | HpyBS272ORF5265P (100% identity) | GTNNAC | HpyBS271ORF2655P |
| 2665 | flagellar hook protein FlgE | |||
| 3720 | 3-5 exonuclease | |||
| 3725 | R | HpyQ56ORFLP (100% identity) | CCNNGG | HpyBS271ORF3730P |
| 3730 | M | M.Hpyfe55ORF3835P (100% identity) | CCNNGG | M.HpyBS271ORF3730P |
| 3735 | 3-5 exonuclease | |||
| 3815 | outer membrane protein | |||
| 3820 | RM | HpyBS272ORF4100P (99% identity) | HpyBS271ORF3820P | |
| 3825 | (Fe-S)-binding protein | |||
| 4640 | peptidoglycan DD-metalloendopeptidase Csd1 | |||
| 4645 | R | HpyBS272ORF3270P (100% identity) | GTAC | HpyBS271ORF4650P |
| 4650 | M | M.HpyBS272ORF3270P (100% identity) | GTAC | M.HpyBS271ORF4650P |
| 4655 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 4740 | catalase | |||
| 4745 | R | HpyBS272ORF3170P (100% identity) | ACGT | HpyBS271ORF4750P |
| 4750 | M | M.HpyBS272ORF3170P (100% identity) | ACGT | M.HpyBS271ORF4750P |
| 4755 | GIY-YIG nuclease family protein | |||
| 4920 | glycosyltransferase family 9 protein | |||
| 4925 | M | M.HpyBS272ORF2995P (100% identity) | ATTAAT | M.HpyBS271ORF4925P |
| 4930 | Hop family outer membrane protein HopJ/HopK | |||
| 5630 | 125 aa hypothetical protein | |||
| 5635 | M | M.HpyBS272ORF2285P (100% identity) | CTNAG | M.HpyBS271ORF5635P |
| 5640 | R | HpyBS272ORF2285P (100% identity) | CTNAG | HpyBS271ORF5635P |
| 5645 | polysaccharide deacetylase | |||
| 5875 | AAA family ATPase | |||
| 5880 | M | M.HpyBS272ORF2040P (100% identity) | CCGG | M.HpyBS271ORF5880P |
| 5885 | R | HpyBS272ORF2040P (99% identity) | CCGG | HpyBS271ORF5880P |
| 5890 | 204 aa hypothetical protein | |||
| 5890 | 204 aa hypothetical protein | |||
| 5895 | M | M.HpyBS272ORF2025P (100% identity) | TCGA | M.HpyBS271ORF5895P |
| 5900 | exodeoxyribonuclease VII large subunit | |||
| 6705 | alpha-1,2-fucosyltransferase | |||
| 6710 | M | M.HpyBS272ORF1205P (100% identity) | GATC | M.HpyBS271ORF6710P |
| 6715 | HTH domain-containing protein | |||
| 6905 | DNA cytosine methyltransferase | |||
| 6910 | R | HpyR10XIP (100% identity) | GTSAC | HpyBS271ORF6915P |
| 6915 | M | M.HpyKG9X (100% identity) | GTSAC | M.HpyBS271ORF6915P |
| 6920 | HNH endonuclease signature motif containing | |||
| 6915 | site-specific DNA-methyltransferase | |||
| 6920 | R | HpyBS272ORF990P (100% identity) | CCTC | HpyBS271ORF6925P |
| 6925 | M | M2.HpyBS272ORF990P (100% identity) | CCTC | M1.HpyBS271ORF6925P |
| 6930 | M | M1.HpyBS272ORF990P (100% identity) | CCTC | M2.HpyBS271ORF6925P |
| 6935 | agmatine/peptidylarginine deiminase | |||
| 7440 | cytochrome c1 | |||
| 7445 | R | HpyBS272ORF470P (100% identity) | TGCA | HpyBS271ORF7450P |
| 7450 | M | M.HpyBS272ORF470P (100% identity) | TGCA | M.HpyBS271ORF7450P |
| 7455 | 67 aa hypothetical protein | |||
| 7630 | DNA polymerase I | |||
| 7635 | S | S2.HpyBS272ORF275P (100% identity) | S2.HpyBS271ORF7645P | |
| 7640 | S | S1.HpyBS272ORF275P (100% identity) | S1.HpyBS271ORF7645P | |
| 7645 | RM | HpyBS272ORF275P (100% identity) | CYANNNNNNTTC | HpyBS271ORF7645P |
| 7650 | ComF family protein | |||
| 7865 | 187 aa hypothetical protein | |||
| 7870 | RM | HpyBS272ORF50P (100% identity) | HpyBS271ORF7870P | |
| 7875 | type III restriction-modification system | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 300 | biotin synthase | |||
| 305 | R | HpyBS272ORF7610P (96% identity) | HpyBS271ORF310P | |
| 310 | M | M.HpyBS272ORF7610P (100% identity) | M.HpyBS271ORF310P | |
| 315 | DNA/RNA non-specific endonuclease | |||
| 360 | rod shape-determining protein MreC | |||
| 365 | R | HpyBS272ORF7545P (99% identity) | HpyBS271ORF370P | |
| 370 | M | M.HpyBS272ORF7545P (100% identity) | M.HpyBS271ORF370P | |
| 375 | copper response regulator transcription factor | |||
| 7870 | Eco57I restriction-modification methylase | |||
| 7875 | R | HpyBS272ORF40P (100% identity) | HpyBS271ORF7880P | |
| 7880 | M | M.HpyBS272ORF40P (100% identity) | M.HpyBS271ORF7880P | |
| 7885 | ATP-dependent DNA helicase RecG | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4010 | NAD(P)H-dependent oxidoreductase | |||
| 4015 | R | HpyBS272GmrSD2P (100% identity) | HpyBS271GmrSD2P | |
| 4020 | tetratricopeptide repeat protein | |||
| 4600 | 50S ribosomal protein L9 | |||
| 4605 | R | HpyBS272GmrSDP (100% identity) | HpyBS271GmrSDP | |
| 4610 | type I glutamate--ammonia ligase | |||