Helicobacter pylori BS26 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Helicobacter pylori BS26 RM systems
Ref: Sripa,B. and Edwards,S.W. unpublished
REBASE ref # 37016
Complete sequence: 1,578,380 bp
GenBank #: CP122951
REBASE acronym: HpyBS26
Org_num: 68424
All begin QAD59_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 3015 | DNA cytosine methyltransferase | |||
| 3020 | M | M.HpyHP22ORF7495P (100% identity) | M.HpyBS26ORF3020P | |
| 3025 | S | S.HpyHP22ORF7495P (100% identity) | S.HpyBS26ORF3020P | |
| 3030 | type I restriction endonuclease | |||
| 3405 | heavy metal translocating P-type ATPase | |||
| 3410 | S | S.HpyBS30ORF4085P (52% identity) | S1.HpyBS26ORF3410P | |
| 3415 | S | S.Hpy334ORFTP (41% identity) | S2.HpyBS26ORF3410P | |
| 3420 | outer membrane beta-barrel protein HofF | |||
| 5030 | 44 aa hypothetical protein | |||
| 5035 | R | Hpyfe8ORF2045P (94% identity) | CTANNNNNNTC | HpyBS26ORF5040P |
| 5040 | M | M.Hpyfe35ORF5005P (96% identity) | CTANNNNNNTC | M.HpyBS26ORF5040P |
| 5045 | S | S.Hpyfe35ORF5005P (97% identity) | CTANNNNNNTC | S.HpyBS26ORF5040P |
| 5055 | RNA degradosome polyphosphate kinase | |||
| 7630 | SprT family zinc-dependent metalloprotease | |||
| 7635 | R | Hpyfe70ORF7585P (97% identity) | CRTANNNNNNNTC | HpyBS26ORF7640P |
| 7640 | M | M.Hpyfe61ORF7705P (97% identity) | CRTANNNNNNNTC | M.HpyBS26ORF7640P |
| 7645 | S | S.HpySG24V (97% identity) | CRTANNNNNNNTC | S.HpyBS26ORF7640P |
| 7650 | 59 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 55 | 713 aa hypothetical protein | |||
| 60 | RM | HpyV007ORF7125P (84% identity) | HpyBS26ORF60P | |
| 65 | RNA-directed DNA polymerase | |||
| 150 | outer membrane protein | |||
| 155 | R | HpyHP22ORF2910P (99% identity) | CCATC | HpyBS26ORF160P |
| 160 | M | M1.HpyHP22ORF2910P (100% identity) | CCATC | M1.HpyBS26ORF160P |
| 165 | M | M2.HpyAL05ORFHP (99% identity) | CCATC | M2.HpyBS26ORF160P |
| 170 | LptF/LptG family permease | |||
| 300 | VRR-NUC domain-containing protein | |||
| 305 | R | HpysHP34ORF1435P (100% identity) | HpyBS26ORF310P | |
| 310 | M | M.HpysHP34ORF1435P (100% identity) | M.HpyBS26ORF310P | |
| 315 | S | S.HpyHP22ORF3060P (99% identity) | S.HpyBS26ORF310P | |
| 320 | DNA polymerase I | |||
| 580 | UDP-N-acetylmuramate dehydrogenase | |||
| ??? | M | M.HpyHP22ORF3345P (100% identity) | M.HpyBS26ORF585P | |
| 590 | R | HpyHP22ORF3345P (100% identity) | HpyBS26ORF585P | |
| 595 | glycosyltransferase family 8 protein | |||
| 1430 | serine O-acetyltransferase | |||
| 1435 | R | HpyHP22ORF4195P (99% identity) | CATG | HpyBS26ORF1440P |
| 1440 | M | M.Hpyfe92ORF1610P (98% identity) | CATG | M.HpyBS26ORF1440P |
| 1445 | HAD family hydrolase | |||
| 1890 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 1895 | M | M.HpyNP13XIV (97% identity) | GCGC | M.HpyBS26ORF1895P |
| 1900 | 144 aa hypothetical protein | |||
| 2070 | Laminin subunit alpha-2 precursor | |||
| 2075 | R | HpyHP22ORF4845P (93% identity) | TCNNGA | HpyBS26ORF2080P |
| 2080 | M | M.HpySG13XIII (99% identity) | TCNNGA | M.HpyBS26ORF2080P |
| 2085 | acetyl-CoA carboxylase biotin carboxylase | |||
| 2735 | ATP-dependent helicase | |||
| 2740 | M | M.HpyK029IX (98% identity) | GTNNAC | M.HpyBS26ORF2740P |
| 2745 | R | HpySG33XP (96% identity) | GTNNAC | HpyBS26ORF2740P |
| 2750 | flagellar hook protein FlgE | |||
| 3005 | phosphatase PAP2 family protein | |||
| 3010 | R | HpysHP34ORF6260P (100% identity) | GGCC | HpyBS26ORF3015P |
| 3015 | M | M.HpysHP34ORF6260P (100% identity) | GGCC | M.HpyBS26ORF3015P |
| 3020 | type I restriction-modification system subunit | |||
| 3945 | (Fe-S)-binding protein | |||
| 3950 | RM | HpyL015ORF3170P (83% identity) | HpyBS26ORF3950P | |
| 3955 | outer membrane protein | |||
| 4820 | peptidoglycan DD-metalloendopeptidase Csd1 | |||
| 4825 | R | HpyHP22ORF5710P (98% identity) | GTAC | HpyBS26ORF4830P |
| 4830 | M | M.HpyHP22ORF5710P (100% identity) | GTAC | M.HpyBS26ORF4830P |
| 4835 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 4915 | catalase | |||
| 4920 | R | HpyHP22ORF35P (99% identity) | ACGT | HpyBS26ORF4925P |
| 4925 | M | M.HpyHP22ORF35P (99% identity) | ACGT | M.HpyBS26ORF4925P |
| 4930 | GIY-YIG nuclease family protein | |||
| 4925 | DNA cytosine methyltransferase | |||
| 4930 | R | HpyHP22ORF45P (100% identity) | ACNGT | HpyBS26ORF4935P |
| 4935 | M | M.HpyHP22ORF45P (99% identity) | ACNGT | M.HpyBS26ORF4935P |
| 4940 | translational GTPase TypA | |||
| 4945 | glycosyltransferase family 9 protein | |||
| 4950 | M | M.HpyHP22ORF60P (99% identity) | ATTAAT | M.HpyBS26ORF4950P |
| 4955 | Hop family outer membrane protein HopJ/HopK | |||
| 5910 | 204 aa hypothetical protein | |||
| 5915 | M | M.HpyHP22ORF1015P (100% identity) | TCGA | M.HpyBS26ORF5915P |
| 5920 | exodeoxyribonuclease VII large subunit | |||
| 6740 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 6745 | M | M.HpyP007IV (93% identity) | GATC | M.HpyBS26ORF6745P |
| 6750 | 353 aa hypothetical protein | |||
| 6900 | sodium/proline symporter PutP | |||
| 6905 | M | M1.Hpyfe104ORF6710P (98% identity) | M1.HpyBS26ORF6905P | |
| 6910 | M | M1.HpyK052V (99% identity) | CCTC | M2.HpyBS26ORF6905P |
| 6915 | agmatine deiminase | |||
| 6960 | DNA methyltransferase | |||
| 6965 | R | HpyHP22ORF2065P (99% identity) | GANTC | HpyBS26ORF6970P |
| 6970 | M | M.HpyV008VI (99% identity) | GANTC | M.HpyBS26ORF6970P |
| 6975 | DNA methyltransferase | |||
| 6980 | 237 aa hypothetical protein | |||
| 6985 | RM | Hpyfe56ORF7190P (66% identity) | HpyBS26ORF6985P | |
| 6990 | carboxylating nicotinate-nucleotide | |||
| 7040 | copper response regulator transcription factor | |||
| 7045 | R | HpyT030ORF210P (95% identity) | GAAGA | HpyBS26ORF7050P |
| 7050 | M | M2.HpyMKF10ORF75P (97% identity) | GAAGA | M1.HpyBS26ORF7050P |
| 7055 | M | M2.HpyHP22ORF2140P (99% identity) | GAAGA | M2.HpyBS26ORF7050P |
| 7060 | site-specific DNA-methyltransferase | |||
| 7525 | 131 aa hypothetical protein | |||
| 7530 | R | HpySG18XIIIP (100% identity) | TGCA | HpyBS26ORF7535P |
| 7535 | M | M.HpyV005XIII (99% identity) | TGCA | M.HpyBS26ORF7535P |
| 7540 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.HpyCRI2ORF7330P (95% identity) | GWCAY | M.HpyBS26ORF40P |
| 50 | R | Hpyfe73ORF40P (96% identity) | GWCAY | HpyBS26ORF40P |
| 55 | 713 aa hypothetical protein | |||
| 655 | type III restriction endonuclease subunit R | |||
| 660 | R | Hpy1100ORFPP (91% identity) | GCAAT | HpyBS26ORF665P |
| 665 | M | M.Hpy030ORF6650P (95% identity) | GCAAT | M.HpyBS26ORF665P |
| 670 | DNA/RNA non-specific endonuclease | |||
| 7055 | site-specific DNA-methyltransferase | |||
| ??? | M | M.Hpyfe65ORF6910P (94% identity) | M.HpyBS26ORF7060P | |
| 7070 | R | HpyT016ORF6775P (89% identity) | HpyBS26ORF7060P | |
| 7075 | rod shape-determining protein MreC | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4175 | NAD(P)H-dependent oxidoreductase | |||
| 4180 | R | HpySG08GmrSD2P (95% identity) | HpyBS26GmrSD2P | |
| 4185 | tetratricopeptide repeat protein | |||
| 4780 | 50S ribosomal protein L9 | |||
| 4785 | R | HpyHP22GmrSD2P (98% identity) | HpyBS26GmrSDP | |
| 4790 | type I glutamate--ammonia ligase | |||