Helicobacter pylori BS22 |
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Putative Helicobacter pylori BS22 RM systems
Ref: Sripa,B. and Edwards,S.W. unpublished
REBASE ref # 37016
Complete sequence: 1,632,515 bp
GenBank #: CP122949
REBASE acronym: HpyBS22
Org_num: 68423
All begin QAP00_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 3200 | DNA cytosine methyltransferase | |||
| 3205 | M | M.HpyID9XV (92% identity) | CCANNNNNNNNTGT | M.HpyBS22ORF3205P |
| 3210 | S | S.HpyBS22ORF3500P (99% identity) | CCANNNNNNNNTGT | S.HpyBS22ORF3205P |
| 3215 | R | HpyMA21ORF2885P (94% identity) | CCANNNNNNNNTGT | HpyBS22ORF3205P |
| 3220 | hydroxyethylthiazole kinase | |||
| 3495 | heavy metal translocating P-type ATPase | |||
| 3500 | S | S.HpyBS22ORF3205P (99% identity) | CCANNNNNNNNTGT | S.HpyBS22ORF3500P |
| 3505 | outer membrane beta-barrel protein HofF | |||
| 5120 | 44 aa hypothetical protein | |||
| 5125 | R | Hpyfe64ORF3230P (95% identity) | CACNNNNNTC | HpyBS22ORF5130P |
| 5130 | M | M.HpyK047ORF2230P (95% identity) | CACNNNNNTC | M.HpyBS22ORF5130P |
| 5135 | S | S.HpyLIM7XI (99% identity) | CACNNNNNTC | S.HpyBS22ORF5130P |
| 5145 | RNA degradosome polyphosphate kinase | |||
| 7840 | SprT family zinc-dependent metalloprotease | |||
| 7845 | R | HpyHP22ORF2730P (95% identity) | HpyBS22ORF7850P | |
| 7850 | M | M.Hpyfe99ORF7900P (34% identity) | M.HpyBS22ORF7850P | |
| 7855 | S | S.HpyPE111ORF6850P (67% identity) | S.HpyBS22ORF7850P | |
| 7860 | FAD-dependent thymidylate synthase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 50 | type III restriction-modification system | |||
| 55 | RM | HpyKH2ORFQP (78% identity) | HpyBS22ORF55P | |
| 60 | Panacea domain-containing protein | |||
| 275 | VRR-NUC domain-containing protein | |||
| 280 | R | Hpyfe110ORF290P (98% identity) | HpyBS22ORF285P | |
| 285 | M | M.Hpyfe61ORF300P (99% identity) | M.HpyBS22ORF285P | |
| 290 | S | S.HpyCH114II (87% identity) | S.HpyBS22ORF285P | |
| 295 | DNA polymerase I | |||
| 1405 | serine O-acetyltransferase | |||
| 1410 | R | Hpyfe66ORF1405P (95% identity) | CATG | HpyBS22ORF1415P |
| 1415 | M | M.HpySG02I (99% identity) | CATG | M.HpyBS22ORF1415P |
| 1420 | HAD family hydrolase | |||
| 1870 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 1875 | M | M.HpyBS281ORF2060P (99% identity) | GCGC | M.HpyBS22ORF1875P |
| 1880 | 144 aa hypothetical protein | |||
| 2070 | Laminin subunit alpha-2 precursor | |||
| 2075 | R | HpyKH16ORFDP (98% identity) | TCNNGA | HpyBS22ORF2080P |
| 2080 | M | M.Hpy476CORFPP (98% identity) | TCNNGA | M.HpyBS22ORF2080P |
| 2085 | methyltransferase | |||
| 2740 | ATP-dependent helicase | |||
| 2745 | M | M.Hpy94ORF4680P (97% identity) | GTNNAC | M.HpyBS22ORF2745P |
| 2750 | R | HpyPE117XIP (97% identity) | GTNNAC | HpyBS22ORF2745P |
| 2755 | flagellar hook protein FlgE | |||
| 3190 | phosphatase PAP2 family protein | |||
| 3195 | R | HpyV004ORF4190P (98% identity) | GGCC | HpyBS22ORF3200P |
| 3200 | M | M.Hpyfe85ORF2990P (99% identity) | GGCC | M.HpyBS22ORF3200P |
| 3205 | type I restriction-modification system subunit | |||
| 4085 | 394 aa hypothetical protein | |||
| 4090 | RM | Hpyfe96ORF3905P (85% identity) | HpyBS22ORF4090P | |
| 4095 | (Fe-S)-binding protein | |||
| 4895 | peptidoglycan DD-metalloendopeptidase Csd1 | |||
| 4900 | R | HpyL003XP (97% identity) | GTAC | HpyBS22ORF4905P |
| 4905 | M | M.HpyKG8VII (97% identity) | GTAC | M.HpyBS22ORF4905P |
| 4910 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 5000 | catalase | |||
| 5005 | R | HpyMA22ORF2340P (96% identity) | ACGT | HpyBS22ORF5010P |
| 5010 | M | M.HpyML3ORFRP (98% identity) | ACGT | M.HpyBS22ORF5010P |
| 5015 | GIY-YIG nuclease family protein | |||
| 5010 | DNA cytosine methyltransferase | |||
| 5015 | R | HpyHP22ORF45P (98% identity) | ACNGT | HpyBS22ORF5020P |
| 5020 | M | M.HpyTW17V (98% identity) | ACNGT | M.HpyBS22ORF5020P |
| 5025 | translational GTPase TypA | |||
| 5030 | glycosyltransferase family 9 protein | |||
| 5035 | M | M.HpyK119II (98% identity) | ATTAAT | M.HpyBS22ORF5035P |
| 5040 | Hop family outer membrane protein HopJ/HopK | |||
| 5760 | 125 aa hypothetical protein | |||
| 5765 | M | M.Hpy155ORF4110P (100% identity) | CTNAG | M.HpyBS22ORF5765P |
| 5770 | R | Hpy155ORF4110P (97% identity) | CTNAG | HpyBS22ORF5765P |
| 5775 | polysaccharide deacetylase | |||
| 6005 | AAA family ATPase | |||
| 6010 | M | M.HpyKH7ORFPP (98% identity) | CCGG | M.HpyBS22ORF6010P |
| 6015 | R | HpySP304VIP (98% identity) | CCGG | HpyBS22ORF6010P |
| 6020 | 204 aa hypothetical protein | |||
| 6020 | 204 aa hypothetical protein | |||
| 6025 | M | M.HpyJO9XI (98% identity) | TCGA | M.HpyBS22ORF6025P |
| 6030 | exodeoxyribonuclease VII large subunit | |||
| 6830 | alpha-1,2-fucosyltransferase | |||
| 6835 | M | M.HpySP509VIII (96% identity) | GATC | M.HpyBS22ORF6835P |
| 6840 | R | Hpyfe78ORF6785P (62% identity) | GATC | HpyBS22ORF6835P |
| 6850 | ACP S-malonyltransferase | |||
| 6995 | sodium/proline symporter PutP | |||
| 7000 | M | M.HpyT029V (98% identity) | CCTTC | M.HpyBS22ORF7000P |
| 7005 | R | HpyTW05VIIIP (97% identity) | CCTTC | HpyBS22ORF7000P |
| 7010 | restriction endonuclease | |||
| 7005 | restriction endonuclease | |||
| 7010 | R | HpysHP34ORF2390P (100% identity) | GTSAC | HpyBS22ORF7015P |
| 7015 | M | M.HpysHP34ORF2390P (99% identity) | GTSAC | M.HpyBS22ORF7015P |
| 7020 | HNH endonuclease | |||
| 7015 | site-specific DNA-methyltransferase | |||
| 7020 | R | HpyTW05IXP (95% identity) | CCTC | HpyBS22ORF7025P |
| 7025 | M | M2.HpyMA10VIIIP (98% identity) | CCTC | M1.HpyBS22ORF7025P |
| 7030 | M | M1.HpyPE140VI (98% identity) | CCTC | M2.HpyBS22ORF7025P |
| 7035 | agmatine deiminase | |||
| 7080 | DNA methyltransferase | |||
| 7085 | R | HpyU408VIP (97% identity) | GANTC | HpyBS22ORF7090P |
| 7090 | M | M.HpyNP08VI (99% identity) | GANTC | M.HpyBS22ORF7090P |
| 7095 | DNA methyltransferase | |||
| 7090 | DNA methyltransferase | |||
| 7100 | RM | HpyJ029ORF260P (86% identity) | HpyBS22ORF7100P | |
| 7105 | tyrosine-type recombinase/integrase | |||
| 7740 | 147 aa hypothetical protein | |||
| 7745 | R | Hpy6ORF15290P (98% identity) | TGCA | HpyBS22ORF7750P |
| 7750 | M | M.HpyK034ORF7415P (97% identity) | M.HpyBS22ORF7750P | |
| 7755 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.HpyQ35ORFFP (96% identity) | GWCAY | M.HpyBS22ORF40P |
| 50 | R | HpyV009XVIIIP (95% identity) | GWCAY | HpyBS22ORF40P |
| 55 | Eco57I restriction-modification methylase | |||
| 630 | biotin synthase | |||
| 635 | R | HpyL007ORF6540P (92% identity) | HpyBS22ORF640P | |
| 640 | M | M.HpyI015ORF7025P (95% identity) | M.HpyBS22ORF640P | |
| 645 | DNA/RNA non-specific endonuclease | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4280 | NAD(P)H-dependent oxidoreductase | |||
| 4285 | R | Hpyfe85GmrSDP (95% identity) | HpyBS22GmrSD2P | |
| 4290 | tetratricopeptide repeat protein | |||
| 4855 | 50S ribosomal protein L9 | |||
| 4860 | R | Hpyfe84GmrSD2P (87% identity) | HpyBS22GmrSDP | |
| 4865 | type I glutamate--ammonia ligase | |||