Helicobacter pylori BS21 |
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Putative Helicobacter pylori BS21 RM systems
Ref: Sripa,B. and Edwards,S.W. unpublished
REBASE ref # 37016
Complete sequence: 1,608,047 bp
GenBank #: CP122948
REBASE acronym: HpyBS21
Org_num: 68422
All begin QAP02_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 3150 | type I restriction endonuclease | |||
| 3155 | M | M.Hpybs3ORFEP (95% identity) | M.HpyBS21ORF3155P | |
| 3160 | S | S.HpyP001ORF4165P (94% identity) | S.HpyBS21ORF3155P | |
| 3165 | R | Hpy256ORFF1P (94% identity) | HpyBS21ORF3155P | |
| 3170 | hydroxyethylthiazole kinase | |||
| 3455 | heavy metal translocating P-type ATPase | |||
| 3460 | S | S.HpyBR4ORF4120P (95% identity) | ACANNNNNNNTAG | S.HpyBS21ORF3460P |
| 3465 | outer membrane beta-barrel protein HofF | |||
| 5140 | motility associated factor glycosyltransferase | |||
| ??? | R | HpyU123IVP (71% identity) | CACNNNNNTAY | HpyBS21ORF5155P |
| 5155 | M | M.HpyOK316ORFVP (94% identity) | CACNNNNNTAY | M.HpyBS21ORF5155P |
| 5160 | S | S.HpysHP34ORF4290P (99% identity) | CACNNNNNTAY | S.HpyBS21ORF5155P |
| 5170 | RNA degradosome polyphosphate kinase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 50 | type III restriction-modification system | |||
| 55 | RM | HpyBS30ORF60P (89% identity) | HpyBS21ORF55P | |
| 60 | 173 aa hypothetical protein | |||
| 145 | outer membrane protein | |||
| 150 | R | HpyQ35ORFDP (87% identity) | HpyBS21ORF150P | |
| 155 | phospholipase D-like domain-containing protein | |||
| 285 | ComF family protein | |||
| 290 | RM | HpyUBN18ORFKP (98% identity) | GAAGA | HpyBS21ORF290P |
| 295 | S | S.HpyME08ORF7100P (94% identity) | S.HpyBS21ORF290P | |
| 300 | DNA polymerase I | |||
| 730 | site-specific DNA-methyltransferase | |||
| 735 | M | M1.HpyKG8V (99% identity) | GAAGA | M1.HpyBS21ORF735P |
| 740 | M | M1.HpysHP34ORF1000P (98% identity) | GAAGA | M2.HpyBS21ORF735P |
| 745 | site-specific DNA-methyltransferase | |||
| 750 | R | HpyBG2VP (98% identity) | GAAGA | HpyBS21ORF735P |
| 755 | copper response regulator transcription factor | |||
| 805 | carboxylating nicotinate-nucleotide | |||
| ??? | RM | Hpyfe40ORF6910P (84% identity) | HpyBS21ORF810P | |
| 820 | DNA methyltransferase | |||
| 1525 | 46 aa hypothetical protein | |||
| 1530 | M | M.HpyR02I (97% identity) | CATG | M.HpyBS21ORF1530P |
| 1535 | HAD family hydrolase | |||
| 1700 | purine-nucleoside phosphorylase | |||
| ??? | R | HpyQ35ORFUP (99% identity) | TCNGA | HpyBS21ORF1710P |
| 1710 | M | M.Hpyfe15ORF1600P (97% identity) | TCNGA | M.HpyBS21ORF1710P |
| 1715 | purine-nucleoside phosphorylase | |||
| 1990 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 1995 | M | M.HpyC004XVIII (97% identity) | GCGC | M.HpyBS21ORF1995P |
| 2000 | 144 aa hypothetical protein | |||
| 2175 | Laminin subunit alpha-2 precursor | |||
| 2180 | R | HpyBR13VIIIP (98% identity) | TCNNGA | HpyBS21ORF2185P |
| 2185 | M | M.HpyC123IX (99% identity) | TCNNGA | M.HpyBS21ORF2185P |
| 2190 | acetyl-CoA carboxylase biotin carboxylase | |||
| 2855 | ATP-dependent helicase | |||
| 2860 | M | M.HpyH017VII (98% identity) | GTNNAC | M.HpyBS21ORF2860P |
| 2865 | R | HpyMA16VIIIP (95% identity) | GTNNAC | HpyBS21ORF2860P |
| 2870 | flagellar hook protein FlgE | |||
| 4045 | SIR2 family protein | |||
| 4050 | RM | Hpy228ORF4715P (84% identity) | HpyBS21ORF4050P | |
| 4055 | (Fe-S)-binding protein | |||
| 4935 | peptidoglycan DD-metalloendopeptidase Csd1 | |||
| 4940 | R | HpyNP02IXP (92% identity) | GTAC | HpyBS21ORF4945P |
| 4945 | M | M.HpyIS2XII (98% identity) | GTAC | M.HpyBS21ORF4945P |
| 4950 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 5030 | catalase | |||
| 5035 | R | HpyBG8ORF2225P (94% identity) | ACGT | HpyBS21ORF5040P |
| 5040 | M | M.HpyGE21ORF2380P (97% identity) | ACGT | M.HpyBS21ORF5040P |
| 5045 | GIY-YIG nuclease family protein | |||
| 5040 | DNA cytosine methyltransferase | |||
| 5045 | R | HpysHP34ORF4390P (98% identity) | ACNGT | HpyBS21ORF5050P |
| 5050 | M | M.HpyU437II (99% identity) | ACNGT | M.HpyBS21ORF5050P |
| 5055 | translational GTPase TypA | |||
| 5060 | glycosyltransferase family 9 protein | |||
| 5065 | M | M.HpyLI21III (97% identity) | ATTAAT | M.HpyBS21ORF5065P |
| 5070 | Hop family outer membrane protein HopJ/HopK | |||
| 6015 | AAA family ATPase | |||
| 6020 | M | M.HpyL001V (98% identity) | CCGG | M.HpyBS21ORF6020P |
| 6025 | R | HpyIN5IVP (99% identity) | CCGG | HpyBS21ORF6020P |
| 6030 | 204 aa hypothetical protein | |||
| 6030 | 204 aa hypothetical protein | |||
| 6035 | M | M.HpyHORF262P (96% identity) | TCGA | M.HpyBS21ORF6035P |
| 6040 | exodeoxyribonuclease VII large subunit | |||
| 6835 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 6840 | M | M.HpyKH4ORFKP (96% identity) | GATC | M.HpyBS21ORF6840P |
| 6845 | R | HpyNP09XIIP (97% identity) | GATC | HpyBS21ORF6840P |
| 6855 | ACP S-malonyltransferase | |||
| 7035 | sodium/proline symporter PutP | |||
| 7040 | R | Hpy340ORF2770P (99% identity) | GTSAC | HpyBS21ORF7045P |
| 7045 | M | M.HpyU436IX (99% identity) | GTSAC | M.HpyBS21ORF7045P |
| 7050 | HNH endonuclease | |||
| 7045 | site-specific DNA-methyltransferase | |||
| 7050 | R | HpyUBN18ORFPP (91% identity) | CCTC | HpyBS21ORF7055P |
| 7055 | M | M2.HpyPO10XP (97% identity) | CCTC | M1.HpyBS21ORF7055P |
| 7060 | M | M1.HpyT005VI (98% identity) | CCTC | M2.HpyBS21ORF7055P |
| 7065 | agmatine/peptidylarginine deiminase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.HpyP37ORFMP (95% identity) | GWCAY | M.HpyBS21ORF40P |
| 50 | R | HpyI002ORF7270P (94% identity) | GWCAY | HpyBS21ORF40P |
| 55 | Eco57I restriction-modification methylase | |||
| 715 | rod shape-determining protein MreC | |||
| 720 | R | HpySW33XIIIP (93% identity) | HpyBS21ORF725P | |
| ??? | M | M.HpyGCT85ORFMP (93% identity) | M.HpyBS21ORF725P | |
| 735 | site-specific DNA-methyltransferase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4240 | NAD(P)H-dependent oxidoreductase | |||
| 4245 | R | HpyL032GmrSD2P (91% identity) | HpyBS21GmrSDP | |
| 4250 | tetratricopeptide repeat protein | |||