Helicobacter pylori BS07 |
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Putative Helicobacter pylori BS07 RM systems
Ref: Sripa,B. and Edwards,S.W. unpublished
REBASE ref # 37016
Complete sequence: 1,620,581 bp
GenBank #: CP122947
REBASE acronym: HpyBS07
Org_num: 68421
All begin QAD57_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 460 | type I restriction endonuclease | |||
| 465 | M | M.Hpyfe118ORF3210P (96% identity) | CTANNNNNNRTG | M.HpyBS07ORF465P |
| 470 | S | S.HpyL018XV (95% identity) | CTANNNNNNRTG | S.HpyBS07ORF465P |
| 475 | R | HpyBT112ORF4690P (97% identity) | CTANNNNNNRTG | HpyBS07ORF465P |
| 480 | hydroxyethylthiazole kinase | |||
| 755 | heavy metal translocating P-type ATPase | |||
| 760 | S | S.HpyK112ORF3930P (99% identity) | ACANNNNNNNTAG | S.HpyBS07ORF760P |
| 765 | outer membrane beta-barrel protein HofF | |||
| 5060 | FAD-dependent thymidylate synthase | |||
| 5065 | S | S.HpyK044ORF555P (98% identity) | CRTANNNNNNRTTT | S.HpyBS07ORF5070P |
| 5070 | M | M.Hpyfe99ORF7900P (96% identity) | CRTANNNNNNRTTT | M.HpyBS07ORF5070P |
| 5075 | R | Hpyfe74ORF7605P (96% identity) | CRTANNNNNNRTTT | HpyBS07ORF5070P |
| 5080 | SprT family zinc-dependent metalloprotease | |||
| 7675 | RNA degradosome polyphosphate kinase | |||
| 7685 | S | S.HpyNP07ORF2180P (89% identity) | S1.HpyBS07ORF7690P | |
| 7690 | M | M.HpySG33ORF2225P (94% identity) | M.HpyBS07ORF7690P | |
| 7695 | R | HpyMKM6ORF462P (49% identity) | HpyBS07ORF7690P | |
| 7700 | S | S3.PmeBin248ORFGP (35% identity) | S2.HpyBS07ORF7690P | |
| 7705 | 51 aa hypothetical protein | |||
| 5 | replication initiation protein | |||
| 10 | S | S3.Fnu4HIIP (25% identity) | S3.HpyBS07ORF7690P | |
| 15 | relaxase/mobilization nuclease domain-containing | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 265 | Hop family outer membrane protein HopJ/HopK | |||
| 270 | M | M.HpyPE138II (98% identity) | ATTAAT | M.HpyBS07ORF270P |
| 275 | glycosyltransferase family 9 protein | |||
| 280 | translational GTPase TypA | |||
| 285 | M | M.HpyTW17V (99% identity) | ACNGT | M.HpyBS07ORF285P |
| 290 | R | HpyQ35ORFJP (100% identity) | ACNGT | HpyBS07ORF285P |
| 295 | DNA cytosine methyltransferase | |||
| 290 | GIY-YIG nuclease family protein | |||
| 295 | M | M.Hpyfe124ORF4660P (98% identity) | ACGT | M.HpyBS07ORF295P |
| 300 | R | HpyF209ORF487P (98% identity) | ACGT | HpyBS07ORF295P |
| 305 | catalase | |||
| 1310 | outer membrane protein | |||
| 1315 | RM | HpyUM065ORF5430P (87% identity) | HpyBS07ORF1315P | |
| 1320 | (Fe-S)-binding protein | |||
| 2120 | peptidoglycan DD-metalloendopeptidase Csd1 | |||
| 2125 | R | HpyK25VIIIP (98% identity) | GTAC | HpyBS07ORF2130P |
| 2130 | M | M.Hpyfe101ORF2910P (100% identity) | GTAC | M.HpyBS07ORF2130P |
| 2135 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 2330 | flagellar hook protein FlgE | |||
| 2335 | R | Hpy90ORF929P (96% identity) | GTNNAC | HpyBS07ORF2340P |
| 2340 | M | M.HpyK114XII (98% identity) | GTNNAC | M.HpyBS07ORF2340P |
| 2345 | ATP-dependent helicase | |||
| 2995 | acetyl-CoA carboxylase biotin carboxylase | |||
| 3000 | M | M.Hpyfe92ORF2245P (100% identity) | TCNNGA | M.HpyBS07ORF3000P |
| 3005 | R | HpyP88ORFBP (92% identity) | TCNNGA | HpyBS07ORF3000P |
| 3010 | Laminin subunit alpha-2 precursor | |||
| 3180 | 144 aa hypothetical protein | |||
| 3185 | M | M.HpyF94ORF182P (99% identity) | GCGC | M.HpyBS07ORF3185P |
| 3190 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 3640 | HAD family hydrolase | |||
| 3645 | M | M.HpyHK721ORFTP (98% identity) | CATG | M.HpyBS07ORF3645P |
| 3650 | IceA2 protein | |||
| 4475 | glycosyltransferase family 8 protein | |||
| 4480 | M | M.HpyNP02VI (99% identity) | GAATTC | M.HpyBS07ORF4480P |
| 4485 | R | HpyTW24XIIIP (99% identity) | GAATTC | HpyBS07ORF4480P |
| 4490 | UDP-N-acetylmuramate dehydrogenase | |||
| 4755 | DNA polymerase I | |||
| 4760 | S | S.HpySW32ORF7285P (69% identity) | S.HpyBS07ORF4765P | |
| 4765 | RM | Hpyfe1ORF445P (98% identity) | CYANNNNNNTTC | HpyBS07ORF4765P |
| 4770 | ComF family protein | |||
| 4990 | 173 aa hypothetical protein | |||
| 4995 | RM | Hpyfe60ORF55P (90% identity) | HpyBS07ORF4995P | |
| 5000 | type III restriction-modification system | |||
| 5160 | 67 aa hypothetical protein | |||
| 5165 | M | M.HpyTW08XI (98% identity) | TGCA | M.HpyBS07ORF5165P |
| 5170 | R | Hpy4109ORFHP (98% identity) | TGCA | HpyBS07ORF5165P |
| 5175 | translation elongation factor Ts | |||
| 5645 | 42 aa hypothetical protein | |||
| 5650 | M | M2.Hpyfe49ORF7125P (99% identity) | GAAGA | M1.HpyBS07ORF5650P |
| 5655 | M | M1.Hpyfe70ORF7000P (99% identity) | GAAGA | M2.HpyBS07ORF5650P |
| 5660 | R | HpySG14VIP (97% identity) | GAAGA | HpyBS07ORF5650P |
| 5665 | copper response regulator transcription factor | |||
| 5715 | carboxylating nicotinate-nucleotide | |||
| 5720 | RM | Hpyfe64ORF7060P (65% identity) | HpyBS07ORF5720P | |
| 5725 | 359 aa hypothetical protein | |||
| 5725 | 359 aa hypothetical protein | |||
| 5730 | M | M.Hpyfe64ORF7055P (100% identity) | GANTC | M.HpyBS07ORF5730P |
| 5735 | R | Hpyfe29ORF6865P (98% identity) | GANTC | HpyBS07ORF5730P |
| 5740 | DNA methyltransferase | |||
| 5780 | TerC family protein | |||
| 5785 | M | M1.HpyK25V (98% identity) | CCTC | M1.HpyBS07ORF5785P |
| 5790 | M | M2.HpyTW06VP (99% identity) | CCTC | M2.HpyBS07ORF5785P |
| 5795 | R | HpyI016VP (91% identity) | CCTC | HpyBS07ORF5785P |
| 5800 | DNA cytosine methyltransferase | |||
| 5985 | ACP S-malonyltransferase | |||
| 5995 | R | Hpyfe113ORF4095P (96% identity) | GATC | HpyBS07ORF6000P |
| 6000 | M | M.HpyK28VIII (96% identity) | GATC | M.HpyBS07ORF6000P |
| 6005 | alpha-1,2-fucosyltransferase | |||
| 6795 | exodeoxyribonuclease VII large subunit | |||
| 6800 | M | M.HpyOK304ORFSP (99% identity) | TCGA | M.HpyBS07ORF6800P |
| 6805 | 204 aa hypothetical protein | |||
| 6805 | 204 aa hypothetical protein | |||
| 6810 | R | HpyT026VP (97% identity) | CCGG | HpyBS07ORF6815P |
| 6815 | M | M.HpyFD577ORFYP (99% identity) | CCGG | M.HpyBS07ORF6815P |
| 6820 | AAA family ATPase | |||
| 7255 | translation elongation factor 4 | |||
| 7260 | M | M.Hpyoh1ORF4535P (100% identity) | GCNGC | M.HpyBS07ORF7260P |
| 7265 | group I intron-associated PD-(D/E)XK | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4405 | DNA/RNA non-specific endonuclease | |||
| 4410 | M | M.Hpyfe54ORF655P (98% identity) | CAAAC | M.HpyBS07ORF4410P |
| 4415 | R | HpyHK721ORFHP (94% identity) | CAAAC | HpyBS07ORF4410P |
| 4420 | biotin synthase | |||
| 4995 | class I SAM-dependent DNA methyltransferase | |||
| 5000 | R | HpyOK311ORFMP (97% identity) | HpyBS07ORF5005P | |
| 5005 | M | M.HpyQ56ORFUP (96% identity) | M.HpyBS07ORF5005P | |
| 5010 | ATP-dependent DNA helicase RecG | |||
| 5625 | rod shape-determining protein MreC | |||
| 5630 | R | HpySP309ORF5415P (89% identity) | CTGA | HpyBS07ORF5635P |
| ??? | M | M.HpyP96ORFFP (97% identity) | CTGA | M.HpyBS07ORF5635P |
| 5645 | 42 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1495 | NAD(P)H-dependent oxidoreductase | |||
| 1500 | R | Hpyfe76GmrSDP (96% identity) | HpyBS07GmrSDP | |
| 1505 | tetratricopeptide repeat protein | |||
| 2080 | 50S ribosomal protein L9 | |||
| 2085 | R | HpyOK302GmrSDP (87% identity) | HpyBS07GmrSD2P | |
| 2090 | type I glutamate--ammonia ligase | |||