Escherichia coli DX6 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli DX6 RM systems
Ref: Cao,G. unpublished
REBASE ref # 28456
| Sequence length: | GenBank #: | |
| Chromosome: | 4,797,551 bp | CP126345 |
| plasmid pDX6A: | 122,915 bp | CP126346 |
REBASE acronym: EcoDX6
Org_num: 67972
All begin QN223_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3320 | IS5-like element ISKpn26 family transposase | |||
| 3325 | R | Sfl877IIP (25% identity) | EcoDX6ORF3345BP | |
| 3330 | IS5-like element IS903B family transposase | |||
| 3335 | R | EcoWP2ORF6710AP (99% identity) | EcoDX6ORF3345AP | |
| 3340 | S | S.EcoWP2ORF6710P (100% identity) | S.EcoDX6ORF3345P | |
| 3345 | M | M.EcoWP2ORF6710P (100% identity) | M.EcoDX6ORF3345P | |
| 3350 | GTPase family protein | |||
| plasmid pDX6A | ||||
| 24085 | recombinase family protein | |||
| 24090 | R | KpnGZKP13ORF27820P (99% identity) | EcoDX6ORF24100P | |
| 24095 | S | S.Kpn00503ORF28240P (65% identity) | S.EcoDX6ORF24100P | |
| 24100 | M | M.Kox45ORF30725P (98% identity) | M.EcoDX6ORF24100P | |
| 23485 | replication initiation protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1705 | cell division protein DamX | |||
| 1710 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoDX6DamP |
| 1715 | ribulose-phosphate 3-epimerase | |||
| 9435 | phosphohydrolase | |||
| 9440 | M | M.SflWW1DcmP (100% identity) | CCWGG | M.EcoDX6DcmP |
| 9445 | V | V.SsoSE61DcmP (100% identity) | CCWGG | V.EcoDX6DcmP |
| 9450 | drug/metabolite exporter YedA | |||
| 20080 | phage lysis protein EssD | |||
| 20085 | M | M.Sso63633ORF22290P (100% identity) | M.EcoDX6ORF20085P | |
| 20090 | 67 aa hypothetical protein | |||
| plasmid pDX6A | ||||
| 23790 | IS1 family transposase | |||
| 23795 | R | SflFF67ORF22305P (100% identity) | GCWGC | EcoDX6ORF23795P |
| 23800 | helix-turn-helix transcriptional regulator | |||