Helicobacter pylori H390r |
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Putative Helicobacter pylori H390r RM systems
Ref: Lu,Q. et al. unpublished
REBASE ref # 36787
Complete sequence: 1,591,696 bp
GenBank #: CP125966
REBASE acronym: HpyH390r
Org_num: 67430
All begin QM974_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4295 | outer membrane beta-barrel protein HofF | |||
| 4300 | S | S.HpyH390dORF4280P (100% identity) | S.HpyH390rORF4300P | |
| 4305 | heavy metal translocating P-type ATPase | |||
| 4580 | hydroxyethylthiazole kinase | |||
| 4585 | R | HpyH390dORF4575P (100% identity) | HpyH390rORF4595P | |
| 4590 | S | S.HpyH390dORF4575P (100% identity) | S.HpyH390rORF4595P | |
| 4595 | M | M.HpyH390dORF4575P (79% identity) | M.HpyH390rORF4595P | |
| 4600 | type I restriction endonuclease | |||
| 4865 | motility associated factor glycosyltransferase | |||
| 4870 | R | Hpyfe82ORF4855P (95% identity) | CACNNNNNTC | HpyH390rORF4875P |
| 4875 | M | M.HpyH390dORF4865P (100% identity) | CACNNNNNTC | M.HpyH390rORF4875P |
| 4880 | S | S.HpyH390dORF4865P (100% identity) | CACNNNNNTC | S.HpyH390rORF4875P |
| 4890 | RNA degradosome polyphosphate kinase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 55 | 714 aa hypothetical protein | |||
| ??? | RM | HpyH390dORF55P (100% identity) | HpyH390rORF60P | |
| 70 | 180 aa hypothetical protein | |||
| 295 | ComF family protein | |||
| 300 | RM | HpyH390dORF295P (100% identity) | CYANNNNNNTTC | HpyH390rORF300P |
| 305 | S | S.HpyH390dORF295P (100% identity) | CYANNNNNNTTC | S.HpyH390rORF300P |
| 310 | DNA polymerase I | |||
| 1280 | formamidase | |||
| 1285 | M | M.HpyH390dORF1270AP (100% identity) | M1.HpyH390rORF1285P | |
| 1290 | M | M.HpyH390dORF1270BP (100% identity) | M2.HpyH390rORF1285P | |
| 1295 | glutamine-hydrolyzing carbamoyl-phosphate | |||
| 1425 | serine O-acetyltransferase | |||
| 1430 | R | HpyH390dORF1420P (100% identity) | CATG | HpyH390rORF1435P |
| 1435 | M | M.HpyH390dORF1420P (100% identity) | CATG | M.HpyH390rORF1435P |
| 1440 | HAD family hydrolase | |||
| 1890 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 1895 | M | M.HpyH390dORF1875P (100% identity) | GCGC | M.HpyH390rORF1895P |
| 1900 | 144 aa hypothetical protein | |||
| 2065 | Laminin subunit alpha-2 precursor | |||
| 2070 | R | Hpyfe85ORF2060P (100% identity) | TCNNGA | HpyH390rORF2075P |
| 2075 | M | M.HpyQ59ORFOP (100% identity) | TCNNGA | M.HpyH390rORF2075P |
| 2080 | acetyl-CoA carboxylase biotin carboxylase | |||
| 2720 | ATP-dependent helicase | |||
| 2725 | M | M.HpyH390dORF2705P (100% identity) | GTNNAC | M.HpyH390rORF2725P |
| 2730 | R | HpyH390dORF2705P (100% identity) | GTNNAC | HpyH390rORF2725P |
| 2735 | flagellar hook protein FlgE | |||
| 2935 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 2940 | M | M.HpyH390dORF2915P (100% identity) | GTAC | M.HpyH390rORF2940P |
| 2945 | R | HpyH390dORF2915P (100% identity) | GTAC | HpyH390rORF2940P |
| 2950 | peptidoglycan DD-metalloendopeptidase Csd1 | |||
| 3780 | outer membrane protein | |||
| 3785 | RM | HpyH390dORF3760P (100% identity) | HpyH390rORF3785P | |
| 3790 | (Fe-S)-binding protein | |||
| 4760 | catalase | |||
| 4765 | R | HpyH390dORF4750P (100% identity) | ACGT | HpyH390rORF4770P |
| 4770 | M | M.HpyH390dORF4750P (100% identity) | ACGT | M.HpyH390rORF4770P |
| 4775 | GIY-YIG nuclease family protein | |||
| 4770 | DNA cytosine methyltransferase | |||
| 4775 | R | Hpyfe97ORF5110P (100% identity) | ACNGT | HpyH390rORF4780P |
| 4780 | M | M.HpyH390dORF4760P (100% identity) | ACNGT | M.HpyH390rORF4780P |
| 4785 | translational GTPase TypA | |||
| 4790 | glycosyltransferase family 9 protein | |||
| 4795 | M | M.HpyH390dORF4775P (100% identity) | ATTAAT | M.HpyH390rORF4795P |
| 4800 | Hop family outer membrane protein HopJ/HopK | |||
| 5740 | AAA family ATPase | |||
| 5745 | M | M.HpyH390dORF5735P (100% identity) | CCGG | M.HpyH390rORF5745P |
| 5750 | R | HpyH390dORF5735P (100% identity) | CCGG | HpyH390rORF5745P |
| 5755 | 204 aa hypothetical protein | |||
| 5755 | 204 aa hypothetical protein | |||
| 5760 | M | M.HpyH390dORF5750P (100% identity) | TCGA | M.HpyH390rORF5760P |
| 5765 | exodeoxyribonuclease VII large subunit | |||
| 6570 | alpha-1,2-fucosyltransferase | |||
| 6575 | M | M.HpyH390dORF6570P (100% identity) | GATC | M.HpyH390rORF6575P |
| 6580 | R | HpyH390dORF6570P (100% identity) | GATC | HpyH390rORF6575P |
| 6590 | ACP S-malonyltransferase | |||
| 6765 | sodium/proline symporter PutP | |||
| 6770 | M | M1.HpyH390dORF6765P (100% identity) | M1.HpyH390rORF6770P | |
| 6775 | M | M2.HpyH390dORF6765P (100% identity) | CCTC | M2.HpyH390rORF6770P |
| 6780 | TerC family protein | |||
| 6820 | DNA methyltransferase | |||
| 6825 | R | HpyH390dORF6825P (100% identity) | GANTC | HpyH390rORF6830P |
| 6830 | M | M.HpyH390dORF6825P (100% identity) | GANTC | M.HpyH390rORF6830P |
| 6835 | N-6 DNA methylase | |||
| 6830 | DNA methyltransferase | |||
| 6835 | RM | HpyH390dORF6830P (99% identity) | HpyH390rORF6835P | |
| 6840 | carboxylating nicotinate-nucleotide | |||
| 6890 | copper response regulator transcription factor | |||
| 6895 | R | HpyH390dORF6900P (100% identity) | GAAGA | HpyH390rORF6900P |
| 6900 | M | M1.HpyH390dORF6900P (100% identity) | GAAGA | M1.HpyH390rORF6900P |
| 6905 | M | M2.HpyH390dORF6900P (100% identity) | GAAGA | M2.HpyH390rORF6900P |
| 6910 | site-specific DNA-methyltransferase | |||
| 7375 | 107 aa hypothetical protein | |||
| 7380 | R | HpyH390dORF7385P (100% identity) | TGCA | HpyH390rORF7385P |
| 7385 | M | M.HpyH390dORF7385P (100% identity) | TGCA | M.HpyH390rORF7385P |
| 7390 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.HpyPE117ORF7560P (95% identity) | M.HpyH390rORF40P | |
| 50 | R | HpyH390dORF40P (99% identity) | HpyH390rORF40P | |
| 55 | 714 aa hypothetical protein | |||
| 640 | type III restriction endonuclease subunit R | |||
| 645 | R | HpyH390dORF635P (97% identity) | CCTAA | HpyH390rORF650P |
| 650 | M | M.HpyH390dORF635P (100% identity) | CCTAA | M.HpyH390rORF650P |
| 655 | DNA/RNA non-specific endonuclease | |||
| 6905 | site-specific DNA-methyltransferase | |||
| ??? | M | M.HpyH390dORF6910P (99% identity) | CTGA | M.HpyH390rORF6910P |
| 6920 | R | HpyH390dORF6910P (97% identity) | CTGA | HpyH390rORF6910P |
| 6925 | rod shape-determining protein MreC | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2980 | type I glutamate--ammonia ligase | |||
| 2985 | R | HpyH390dGmrSD2P (100% identity) | HpyH390rGmrSD2P | |
| 2990 | 50S ribosomal protein L9 | |||
| 3555 | tetratricopeptide repeat protein | |||
| 3560 | R | HpyH390dGmrSDP (100% identity) | HpyH390rGmrSDP | |
| 3565 | NAD(P)H-dependent oxidoreductase | |||