Escherichia coli LR-06 |
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Putative Escherichia coli LR-06 RM systems
Ref: Hoang,H.T.T. et al. J Glob Antimicrob Resist 30, 152-154 (2022)
REBASE ref # 36782
| Sequence length: | GenBank #: | |
| Chromosome: | 4,633,768 bp | AP025546 |
| plasmid pLR-06-1: | 260,770 bp | AP025547 |
| plasmid pLR-06-2: | 145,376 bp | AP025548 |
REBASE acronym: EcoLR06
Org_num: 67414
All begin EEGS01_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| plasmid pLR-06-2 | ||||
| 47090 | 168 aa hypothetical protein | |||
| 47100 | R | EcoPK8277ORF23015P (99% identity) | EcoLR06ORF47120P | |
| 47110 | S | S.EcoRL21ORF23455P (62% identity) | S.EcoLR06ORF47120P | |
| 47120 | M | M.Sbo80ORF21375P (96% identity) | M.EcoLR06ORF47120P | |
| 47130 | 73 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3290 | cell division protein DamX | |||
| 3300 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoLR06DamP |
| 3310 | ribulose-phosphate 3-epimerase | |||
| 4470 | acrEF/envCD operon repressor | |||
| 4480 | M | M.Sso8ORF2545P (100% identity) | ATGCAT | M.EcoLR06ORF4480P |
| 4490 | DNA-binding protein Fis | |||
| 13180 | protein ninB | |||
| 13190 | M | M.SflWW1ORF7070P (100% identity) | GATC | M.EcoLR06ORF13190P |
| 13200 | 139 aa hypothetical protein | |||
| 17560 | 231 aa hypothetical protein | |||
| 17570 | M | M.SdyFF10DcmP (99% identity) | CCWGG | M.EcoLR06DcmP |
| 17580 | V | V.SsoSE61DcmP (100% identity) | CCWGG | V.EcoLR06DcmP |
| 17590 | amino acid exporter for phenylalanine, | |||
| 25370 | phage holin, lambda family protein | |||
| 25380 | M | M.EcoSTEC413ORF8565P (100% identity) | M.EcoLR06ORF25380P | |
| 25390 | 64 aa hypothetical protein | |||
| 34160 | phage holin, lambda family protein | |||
| 34170 | M | M.Eco6114ORF13090P (99% identity) | M.EcoLR06ORF34170P | |
| 34180 | 67 aa hypothetical protein | |||
| 37960 | 9-O-acetyl-N-acetylneuraminic acid | |||
| ??? | R | EcosB2CORFAP (100% identity) | EcoLR06ORF37970P | |
| 37990 | 332 aa hypothetical protein | |||
| plasmid pLR-06-1 | ||||
| 44360 | 55 aa hypothetical protein | |||
| 44370 | M | M.StyCORF187P (100% identity) | CCWGG | M.EcoLR06ORF44370P |
| 44380 | nuclease | |||
| 44900 | chromosome segregation protein SMC | |||
| 44910 | RM | EcoS30ORF25190P (100% identity) | EcoLR06ORF44910P | |
| 44920 | 1204 aa hypothetical protein | |||
| 45960 | DNA-binding protein | |||
| 45970 | M | M.Ype21801ORF197P (100% identity) | M.EcoLR06ORF45970P | |
| 45980 | 273 aa hypothetical protein | |||
| plasmid pLR-06-2 | ||||
| 46160 | DNA repair protein | |||
| 46170 | RM | SenPK1ORF23900P (100% identity) | ATGAAG | EcoLR06ORF46170P |
| 46180 | 587 aa hypothetical protein | |||
| 46600 | transcriptional regulator | |||
| 46610 | R | EfeEF31ORF22540P (100% identity) | GCWGC | EcoLR06ORF46610P |
| 46620 | insertion element IS1 protein InsB | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 15980 | 435 aa hypothetical protein | |||
| 15990 | R | EcoPSJ14ORF16010P (100% identity) | EcoLR06ORF15990P | |
| 16000 | 115 aa hypothetical protein | |||
| 25240 | 50 aa hypothetical protein | |||
| 25250 | R | EcoPC1McrCP (93% identity) | EcoLR06McrCP | |
| 25260 | R | EcoPC1McrBP (100% identity) | EcoLR06McrBP | |
| 25270 | insertion element IS1 protein InsB | |||