Helicobacter pylori GCT17 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Helicobacter pylori GCT17 RM systems
Ref: Guevara-Tique,A. et al. unpublished
REBASE ref # 36786
Complete sequence: 1,635,188 bp
GenBank #: CP071940
REBASE acronym: HpyGCT17
Org_num: 67426
All begin
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| ??? | M | M.HpyC018ORF4430P (88% identity) | GAANNNNNNTGY | M.HpyGCT17ORFB1P |
| ??? | S | S.HpyT026ORF3880P (65% identity) | GAANNNNNNTGY | S.HpyGCT17ORFB1P |
| ??? | R | Hpy340ORF2210P (95% identity) | GAANNNNNNTGY | HpyGCT17ORFB1P |
| ??? | M | M.HpyME45ORF7575P (7% identity) | M.HpyGCT17ORFD1P | |
| ??? | S | S.HpyT004ORF7085P (97% identity) | S.HpyGCT17ORFD1P | |
| ??? | S | S.HpyTW22ORF2200P (98% identity) | S.HpyGCT17ORFUP | |
| ??? | M | M.HpySP308ORF5410P (97% identity) | M.HpyGCT17ORFUP | |
| ??? | R | HpyCO5ORF2160P (73% identity) | HpyGCT17ORFUP | |
| ??? | M | M.HpySP402ORF6895P (35% identity) | CRTANNNNNNRTAA | M.HpyGCT17ORFRP |
| ??? | S | S.HpyPE16ORF7625P (98% identity) | CRTANNNNNNRTAA | S.HpyGCT17ORFRP |
| ??? | R | HpyBR5XIIIP (96% identity) | HpyGCT17ORFC1P | |
| ??? | M | M.HpyS300ORF3070P (61% identity) | M.HpyGCT17ORFC1P | |
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | M | M.Hpy4ORF470P (98% identity) | GATC | M.HpyGCT17ORFA1P |
| ??? | R | HpyGCT85ORFQP (100% identity) | GTSAC | HpyGCT17ORFYP |
| ??? | M | M.HpyH018IX (100% identity) | GTSAC | M.HpyGCT17ORFYP |
| ??? | R | HpyT005VIP (91% identity) | CCTC | HpyGCT17ORFZP |
| ??? | M | M2.HpyU204VP (98% identity) | CCTC | M1.HpyGCT17ORFZP |
| ??? | M | M1.HpyCOL103V (100% identity) | CCTC | M2.HpyGCT17ORFZP |
| ??? | M | M.HpyU437ORF7385P (52% identity) | M.HpyGCT17ORFXP | |
| ??? | M | M2.HpyU203ORF3725P (100% identity) | GACGC | M1.HpyGCT17ORFWP |
| ??? | M | M1.HpyU305ORF3485P (100% identity) | GACGC | M2.HpyGCT17ORFWP |
| ??? | R | HpyU305ORF3485P (100% identity) | GACGC | HpyGCT17ORFWP |
| ??? | R | HpyME44XP (53% identity) | GTAC | HpyGCT17ORFVBP |
| ??? | R | Hpy13207XP (38% identity) | GTAC | HpyGCT17ORFVAP |
| ??? | M | M.HpyGCT85ORFRP (99% identity) | GTAC | M.HpyGCT17ORFVP |
| ??? | M | M.HpyCO1XI (98% identity) | TCGA | M.HpyGCT17ORFTP |
| ??? | R | HpyMT5119VP (97% identity) | HpyGCT17ORFSP | |
| ??? | RM | HpyPOR109ORF7230P (79% identity) | HpyGCT17ORFPP | |
| ??? | RM | HpyPE11ORF7125P (96% identity) | HpyGCT17ORFOP | |
| ??? | S | S.HpyPR01ORF6915P (50% identity) | S1.HpyGCT17ORFOP | |
| ??? | S | S2.HpyPO10ORF6970P (89% identity) | S2.HpyGCT17ORFOP | |
| ??? | M | M1.HpySP19IX (98% identity) | GAAGA | M.HpyGCT17ORFNP |
| ??? | R | HpyLI13IIIP (98% identity) | GAAGA | HpyGCT17ORFNP |
| ??? | RM | HpyNCI56ORFUP (91% identity) | HpyGCT17ORFMP | |
| ??? | M | M.HpyMT5118III (99% identity) | GANTC | M.HpyGCT17ORFLP |
| ??? | R | HpyGCT85ORFEP (97% identity) | GANTC | HpyGCT17ORFLP |
| ??? | RM | HpyZ004ORF3405P (74% identity) | HpyGCT17ORFKP | |
| ??? | M | M.HpySP306I (98% identity) | CATG | M.HpyGCT17ORFJP |
| ??? | R | HpyCOL110IP (96% identity) | CATG | HpyGCT17ORFJP |
| ??? | R | HpySP807XIIP (99% identity) | TCNNGA | HpyGCT17ORFIP |
| ??? | M | M.HpyPO03XI (100% identity) | TCNNGA | M.HpyGCT17ORFIP |
| ??? | M | M.HpyPE124VI (91% identity) | GTNNAC | M.HpyGCT17ORFHP |
| ??? | R | HpySP505XIIP (92% identity) | GTNNAC | HpyGCT17ORFHP |
| ??? | M | M.Hpy340ORF4380P (97% identity) | GCGC | M.HpyGCT17ORFGP |
| ??? | R | HpyPE101ORF2270P (99% identity) | HpyGCT17ORFDP | |
| ??? | M | M.HpyAs009ORF4195P (93% identity) | M.HpyGCT17ORFDP | |
| ??? | R | HpyPE140IIP (98% identity) | ACNGT | HpyGCT17ORFCP |
| ??? | M | M.HpyLIM2XV (98% identity) | ACNGT | M.HpyGCT17ORFCP |
| ??? | M | M.HpyPE138II (98% identity) | ATTAAT | M.HpyGCT17ORFBP |
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | M | M.HpySP805ORF7120P (95% identity) | GWCAY | M.HpyGCT17ORFQP |
| ??? | R | HpyC82ORFIP (93% identity) | GWCAY | HpyGCT17ORFQP |
| ??? | M | M.HpyGCT97ORF7115P (96% identity) | M.HpyGCT17ORFFP | |
| ??? | R | HpyC027ORF6645P (92% identity) | HpyGCT17ORFFP | |
| ??? | M | M.HpyBR23ORF7445P (91% identity) | M.HpyGCT17ORFEP | |
| ??? | R | HpyU417ORF7235P (93% identity) | HpyGCT17ORFEP | |
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | R | HpySW34GmrSDP (81% identity) | HpyGCT17GmrSD2P | |
| ??? | R | HpyH009GmrSD2P (96% identity) | HpyGCT17GmrSDP | |