Helicobacter pylori GCT55 |
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Putative Helicobacter pylori GCT55 RM systems
Ref: Guevara-Tique,A. et al. unpublished
REBASE ref # 36786
Complete sequence: 1,596,494 bp
GenBank #: CP071939
REBASE acronym: HpyGCT55
Org_num: 67427
All begin
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| ??? | S | S.HpyU005X (94% identity) | GAANNNNNNNTGT | S.HpyGCT55ORFUP |
| ??? | R | HpySW34ORF2475P (95% identity) | CTANNNNNNCTC | HpyGCT55ORFYP |
| ??? | S | S.HpySP505VII (97% identity) | CTANNNNNNCTC | S.HpyGCT55ORFYP |
| ??? | M | M.HpyU204XII (91% identity) | CTANNNNNNCTC | M.HpyGCT55ORFYP |
| ??? | R | Hpy33CORF2515P (72% identity) | HpyGCT55ORFQP | |
| ??? | M | M.HpyBR13X (96% identity) | M.HpyGCT55ORFQP | |
| ??? | S | S.HpyPOR111ORF2130P (90% identity) | S.HpyGCT55ORFQP | |
| ??? | M | M.HpyC017XIV (95% identity) | M.HpyGCT55ORFXP | |
| ??? | R | HpyGCT97ORF5865P (97% identity) | HpyGCT55ORFXP | |
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | RM | HpySP309ORF3020P (79% identity) | HpyGCT55ORFWP | |
| ??? | M | M.HpyJO6ORF2250P (91% identity) | M.HpyGCT55ORFRP | |
| ??? | R | HpySW14ORF2255P (98% identity) | ACNGT | HpyGCT55ORFTP |
| ??? | M | M.HpyU403II (98% identity) | ACNGT | M.HpyGCT55ORFTP |
| ??? | M | M.HpyCOL5ORF2205P (99% identity) | ATTAAT | M.HpyGCT55ORFSP |
| ??? | M | M.HpyDO8ORF4290P (100% identity) | GCNGC | M.HpyGCT55ORFPP |
| ??? | M | M.HpyU418II (100% identity) | CCGG | M.HpyGCT55ORFOP |
| ??? | R | HpyCOL203IVP (93% identity) | CCGG | HpyGCT55ORFOP |
| ??? | M | M.HpyR3cORF7075P (88% identity) | M.HpyGCT55ORFNP | |
| ??? | M | M.HpySP14IX (98% identity) | CCTTC | M.HpyGCT55ORFMP |
| ??? | R | HpyLI01VIIIP (98% identity) | CCTTC | HpyGCT55ORFMP |
| ??? | M | M2.HpyBGR1VP (97% identity) | CCTC | M1.HpyGCT55ORFLP |
| ??? | M | M1.HpyPO103IV (71% identity) | M2.HpyGCT55ORFLP | |
| ??? | M | M.HpyH025III (99% identity) | TGCA | M.HpyGCT55ORFKP |
| ??? | R | HpyJO6XVP (99% identity) | TGCA | HpyGCT55ORFKP |
| ??? | M | M.HpyKH8ORFCP (94% identity) | M.HpyGCT55ORFJP | |
| ??? | R | HpyP102VIIP (98% identity) | GTNNAC | HpyGCT55ORFIP |
| ??? | M | M.HpyPE117XI (93% identity) | GTNNAC | M.HpyGCT55ORFIP |
| ??? | S | S2.Hpy13338ORF59P (93% identity) | S2.HpyGCT55ORFHP | |
| ??? | S | S.HpyH018ORF7005P (48% identity) | S1.HpyGCT55ORFHP | |
| ??? | RM | HpyPE103XV (98% identity) | CYANNNNNNTTC | HpyGCT55ORFHP |
| ??? | RM | HpySP507ORF7060P (25% identity) | HpyGCT55ORFGBP | |
| ??? | RM | Hpy478AORFC1P (63% identity) | HpyGCT55ORFGAP | |
| ??? | R | HpyIR1XIP (98% identity) | TCNNGA | HpyGCT55ORFEP |
| ??? | M | M.HpyPU007XIII (99% identity) | TCNNGA | M.HpyGCT55ORFEP |
| ??? | M | M.HpyU407XIV (96% identity) | GCGC | M.HpyGCT55ORFDP |
| ??? | R | HpySP05XIP (99% identity) | GCGC | HpyGCT55ORFDP |
| ??? | R | HpyT008ORF2400P (54% identity) | GTAC | HpyGCT55ORFCP |
| ??? | M | M.Hpy1169ORF7630P (97% identity) | GTAC | M.HpyGCT55ORFCP |
| ??? | M | M.HpyISR5ORFAP (56% identity) | M.HpyGCT55ORFVP | |
| ??? | RM | HpyT016ORF6715P (84% identity) | HpyGCT55ORFVP | |
| ??? | M | M.HpyB8ORF1574P (98% identity) | M.HpyGCT55ORFBP | |
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | R | HpyC026ORF7490P (94% identity) | GACC | HpyGCT55ORFFP |
| ??? | M | M.HpySP20ORF7270P (95% identity) | GACC | M.HpyGCT55ORFFP |
| ??? | M | M.HpyNCI22ORFHP (28% identity) | M.HpyGCT55ORFZBP | |
| ??? | M | M.HpySWT03ORF6755P (32% identity) | M.HpyGCT55ORFZAP | |
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | R | HpyI025GmrSDP (39% identity) | HpyGCT55GmrSD2AP | |
| ??? | R | HpyPE103GmrSDP (50% identity) | HpyGCT55GmrSD2BP | |
| ??? | R | HpyDO10GmrSD2P (93% identity) | HpyGCT55GmrSDP | |