Helicobacter pylori GCT56 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Helicobacter pylori GCT56 RM systems
Ref: Guevara-Tique,A. et al. unpublished
REBASE ref # 36786
Complete sequence: 1,624,702 bp
GenBank #: CP071938
REBASE acronym: HpyGCT56
Org_num: 67428
All begin
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| ??? | R | HpyPU003ORF2075P (90% identity) | CACNNNNNTC | HpyGCT56ORFA1P |
| ??? | M | M.Hpy328ORF5205P (97% identity) | CACNNNNNTC | M.HpyGCT56ORFA1P |
| ??? | S | S.HpyLIM7XI (99% identity) | CACNNNNNTC | S.HpyGCT56ORFA1P |
| ??? | R | HpyME12XVIIIP (95% identity) | CRTANNNNNNNTC | HpyGCT56ORFXP |
| ??? | M | M.HpyB14ORF7385P (95% identity) | CRTANNNNNNNTC | M.HpyGCT56ORFXP |
| ??? | S | S.HpyGT04V (95% identity) | CRTANNNNNNNTC | S.HpyGCT56ORFXP |
| ??? | R | HpyU207XIIIP (96% identity) | HpyGCT56ORFJP | |
| ??? | S | S.HpyPOR115XV (65% identity) | S.HpyGCT56ORFJP | |
| ??? | M | M.HpyB147ORF5145P (89% identity) | M.HpyGCT56ORFJP | |
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | M | M.HpySP401ORF1660P (98% identity) | CCGG | M.HpyGCT56ORFWP |
| ??? | R | HpySP705IIIP (98% identity) | CCGG | HpyGCT56ORFWP |
| ??? | M | M.HpyNCI22IX (97% identity) | TCGA | M.HpyGCT56ORFVP |
| ??? | R | R2.HpyKH27ORFMP (100% identity) | R2.HpyGCT56ORFE1P | |
| ??? | R | R1.HpyU101ORF870P (97% identity) | R1.HpyGCT56ORFE1P | |
| ??? | M | M2.HpySW27ORF870P (99% identity) | M2.HpyGCT56ORFE1P | |
| ??? | M | M1.HpySP11ORF850P (100% identity) | M1.HpyGCT56ORFE1P | |
| ??? | M | M.HpyGCT55ORFNP (93% identity) | M.HpyGCT56ORFUP | |
| ??? | R | HpyI001VIIIP (92% identity) | CCTC | HpyGCT56ORFTP |
| ??? | M | M2.HpyAL4IIIP (98% identity) | CCTC | M1.HpyGCT56ORFTP |
| ??? | M | M1.HpySP403VI (98% identity) | CCTC | M2.HpyGCT56ORFTP |
| ??? | R | HpyOki112ORF7890P (98% identity) | TGCA | HpyGCT56ORFSP |
| ??? | M | M.HpyF010X (98% identity) | TGCA | M.HpyGCT56ORFSP |
| ??? | S | S2.HpyNCI57ORFRP (86% identity) | S2.HpyGCT56ORFRP | |
| ??? | S | S.HpyDO4ORF6935P (51% identity) | S1.HpyGCT56ORFRP | |
| ??? | RM | HpySP05ORF800P (98% identity) | CAANNNNNNTTG | HpyGCT56ORFRP |
| ??? | M | M.HpyKH17ORFB1P (99% identity) | M.HpyGCT56ORFC1P | |
| ??? | R | HpyFR3ORF7050P (97% identity) | HpyGCT56ORFC1P | |
| ??? | RM | HpyCOL211ORF7420P (61% identity) | HpyGCT56ORFQP | |
| ??? | R | HpyPE117IXP (98% identity) | GANTC | HpyGCT56ORFOP |
| ??? | M | M.HpyP005X (99% identity) | GANTC | M.HpyGCT56ORFOP |
| ??? | RM | HpyAL9ORF470P (85% identity) | HpyGCT56ORFZP | |
| ??? | R | HpyME45IXP (99% identity) | GAAGA | HpyGCT56ORFMP |
| ??? | M | M1.HpyCOL114V (99% identity) | GAAGA | M1.HpyGCT56ORFMP |
| ??? | M | M2.HpyG004X (94% identity) | GAAGA | M2.HpyGCT56ORFMP |
| ??? | R | HpySP610IVP (99% identity) | GATATC | HpyGCT56ORFNP |
| ??? | M | M.HpyCOL112VI (97% identity) | GATATC | M.HpyGCT56ORFNP |
| ??? | R | HpySP507IVP (100% identity) | CGWCG | HpyGCT56ORFKP |
| ??? | M | M.Hpyfe21ORF4730P (100% identity) | CGWCG | M.HpyGCT56ORFKP |
| ??? | M | M.HpyGI (98% identity) | TCNNGA | M.HpyGCT56ORFIP |
| ??? | R | HpySWT07ORF5395P (97% identity) | TCNNGA | HpyGCT56ORFIP |
| ??? | M | M.Hpy2012ORF4185P (97% identity) | GTAC | M.HpyGCT56ORFHP |
| ??? | R | HpyPE17XVIIIP (94% identity) | GTAC | HpyGCT56ORFHP |
| ??? | RM | HpyAR1ORF3235P (91% identity) | HpyGCT56ORFYP | |
| ??? | M | M.HpyP98ORFVP (94% identity) | M.HpyGCT56ORFGP | |
| ??? | R | HpyF17I (99% identity) | TCNGA | HpyGCT56ORFFP |
| ??? | M | M.HpyNCI14VIII (99% identity) | TCNGA | M.HpyGCT56ORFFP |
| ??? | M | M.HpyCOL122X (92% identity) | GTNNAC | M.HpyGCT56ORFEP |
| ??? | R | Hpy5019ORF7585P (98% identity) | GTNNAC | HpyGCT56ORFEP |
| ??? | M | M.HpyPO06XIV (97% identity) | GCGC | M.HpyGCT56ORFDP |
| ??? | M | M.HpyU414III (97% identity) | ATTAAT | M.HpyGCT56ORFBP |
| ??? | M | M.Hpy5005ORF8010P (98% identity) | ACNGT | M.HpyGCT56ORFCP |
| ??? | R | HpySP404IIP (98% identity) | ACNGT | HpyGCT56ORFCP |
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | R | HpySP321ORF7470P (93% identity) | HpyGCT56ORFPP | |
| ??? | M | M.HpyCOL307ORF7010P (91% identity) | M.HpyGCT56ORFPP | |
| ??? | M | M.HpyGCT56ORFLP (47% identity) | M.HpyGCT56ORFD1P | |
| ??? | M | M.HpyG005ORF6955P (94% identity) | M.HpyGCT56ORFLP | |
| ??? | R | HpyI010ORF6360P (93% identity) | HpyGCT56ORFLP | |
| ??? | M | M.HpySP10ORF6865P (93% identity) | M.HpyGCT56ORFB1P | |
| ??? | R | HpyNCI39ORFWP (93% identity) | HpyGCT56ORFB1P | |
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | R | HpyCOL205GmrSD2P (92% identity) | HpyGCT56GmrSDP | |