Escherichia coli GYB01 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli GYB01 RM systems
Ref: Yu,J. unpublished
REBASE ref # 27628
| Sequence length: | GenBank #: | |
| Chromosome: | 4,857,268 bp | CP125731 |
| plasmid pGYB01-1: | 107,935 bp | CP125732 |
| plasmid pGYB01-2: | 165,770 bp | CP125733 |
REBASE acronym: EcoGYB01
Org_num: 67178
All begin QMW19_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 21410 | SprT family zinc-dependent metalloprotease | |||
| 21415 | R | SspS13ORF2650P (100% identity) | GGANNNNNNCTAY | EcoGYB01IP |
| 21420 | DUF262 domain-containing HNH endonuclease family | |||
| 21425 | DUF262 domain-containing protein | |||
| 21430 | S | S.SspS13ORF2650P (100% identity) | GGANNNNNNCTAY | S.EcoGYB01I |
| 21435 | M | M.SspS13ORF2650P (100% identity) | GGANNNNNNCTAY | M.EcoGYB01I |
| 21440 | transcription factor | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1715 | cell division protein DamX | |||
| 1720 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoGYB01Dam |
| 1725 | ribulose-phosphate 3-epimerase | |||
| 2345 | DUF2556 family protein | |||
| 2350 | M | M.Sso8ORF2545P (100% identity) | ATGCAT | M.EcoGYB01ORF2350P |
| 2355 | DNA-binding transcriptional regulator Fis | |||
| 9515 | HD domain-containing protein | |||
| 9520 | M | M.Ecoppa8DcmP (100% identity) | CCWGG | M.EcoGYB01Dcm |
| 9525 | V | V.SflSTLE3DcmP (100% identity) | CCWGG | V.EcoGYB01DcmP |
| 9530 | drug/metabolite exporter YedA | |||
| 18225 | zinc ribbon domain-containing protein | |||
| 18230 | M | M.EcosEC31ORF18555P (100% identity) | GGTACC | M.EcoGYB01II |
| 18235 | tyrosine-type recombinase/integrase | |||
| 20010 | HNH endonuclease | |||
| 20015 | R | Sso8ORF19860P (100% identity) | EcoGYB01ORF20015P | |
| 20020 | 55 aa hypothetical protein | |||
| plasmid pGYB01-1 | ||||
| 23860 | 73 aa hypothetical protein | |||
| 23865 | M | M.SspPIBORF23080P (100% identity) | M.EcoGYB01ORF23865P | |
| 23870 | 103 aa hypothetical protein | |||
| plasmid pGYB01-2 | ||||
| 24935 | 103 aa hypothetical protein | |||
| 24940 | M | M.KpnVA569ORF28145P (100% identity) | M.EcoGYB01ORF24940P | |
| 24945 | 73 aa hypothetical protein | |||