Escherichia coli ETEC1738 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli ETEC1738 RM systems
Ref: Vereecke,N. et al. Front Microbiol 14, 1139312 (2023)
REBASE ref # 36777
| Sequence length: | GenBank #: | |
| Chromosome: | 5,580,344 bp | CP122768 |
| plasmid unnamed1: | 232,987 bp | CP122769 |
| plasmid unnamed2: | 93,447 bp | CP122770 |
| plasmid unnamed3: | 67,092 bp | CP122771 |
REBASE acronym: EcoC1738
Org_num: 67353
All begin QDY55_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 470 | 184 aa hypothetical protein | |||
| 475 | R | EcoBA3ORF515P (99% identity) | ACYNNNNNNGTTC | EcoC1738ORF485P |
| 480 | S | S.Ecos53ORF20340P (100% identity) | ACYNNNNNNGTTC | S.EcoC1738ORF485P |
| 485 | M | M.SenS0935ORF770P (99% identity) | ACYNNNNNNGTTC | M.EcoC1738ORF485P |
| 490 | type II toxin-antitoxin system RelB/DinJ family | |||
| 24335 | adenine/cytosine-specific restriction | |||
| 24340 | R | Eco16C13ORF22655P (100% identity) | EcoC1738ORF24345P | |
| 24345 | M | M.Eco10082I (100% identity) | M.EcoC1738ORF24345P | |
| 24350 | S | S.Eco16C13ORF22655P (47% identity) | S1.EcoC1738ORF24345P | |
| 24355 | S | S.Eco16C13ORF22655P (25% identity) | S2.EcoC1738ORF24345P | |
| 24360 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2135 | cell division protein DamX | |||
| 2140 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoC1738DamP |
| 2145 | ribulose-phosphate 3-epimerase | |||
| 2735 | DUF2556 family protein | |||
| 2740 | M | M.Sdy12039ORFBP (100% identity) | ATGCAT | M.EcoC1738ORF2740P |
| 2745 | DNA-binding transcriptional regulator Fis | |||
| 4390 | BREX-1 system phosphatase PglZ type A | |||
| 4395 | RM | Eco10082ORF3227P (99% identity) | EcoC1738ORF4395P | |
| 4400 | IS5-like element IS903B family transposase | |||
| 6335 | TrmB family transcriptional regulator | |||
| 6340 | M | M.EcoC1744ORF6450P (100% identity) | M.EcoC1738ORF6340P | |
| 6350 | 132 aa hypothetical protein | |||
| 7990 | recombination protein NinB | |||
| 7995 | M | M.EcoLHM101ORFIP (96% identity) | GATC | M.EcoC1738ORF7995P |
| 8000 | NinE family protein | |||
| 10305 | phosphohydrolase | |||
| 10310 | M | M.Eco10082DcmP (100% identity) | CCWGG | M.EcoC1738DcmP |
| 10315 | V | V.Eco16C13DcmP (100% identity) | V.EcoC1738DcmP | |
| 10320 | drug/metabolite exporter YedA | |||
| 17330 | 92 aa hypothetical protein | |||
| 17335 | M | M.EcoW26ORF35400P (100% identity) | M.EcoC1738ORF17335P | |
| 17340 | TrmB family transcriptional regulator | |||
| 19255 | NinE family protein | |||
| 19260 | M | M.EcoLHM101ORFIP (96% identity) | GATC | M.EcoC1738ORF19260P |
| 19265 | recombination protein NinB | |||
| 20630 | LexA family transcriptional regulator | |||
| 20635 | M | M.Sso90ORF15820P (100% identity) | GATC | M.EcoC1738ORF20635P |
| 20640 | PerC family transcriptional regulator | |||
| 22455 | flagellar basal body P-ring formation chaperone | |||
| 22460 | M | M.Ecoi362ORF3506P (100% identity) | CCWGG | M.EcoC1738ORF22460P |
| 22465 | R | Eco16C13ORF20550P (100% identity) | CCWGG | EcoC1738ORF22460P |
| 22470 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 24140 | LexA family transcriptional regulator | |||
| 24145 | M | M.Sso30ORF925P (100% identity) | GATC | M.EcoC1738ORF24145P |
| 24150 | PerC family transcriptional regulator | |||
| 24575 | HNH endonuclease | |||
| 24580 | R | Eco10082ORF1729P (100% identity) | EcoC1738ORF24580P | |
| 24585 | 46 aa hypothetical protein | |||
| plasmid unnamed1 | ||||
| 27835 | 55 aa hypothetical protein | |||
| 27840 | M | M.YpsF1ORFCP (100% identity) | CCWGG | M.EcoC1738ORF27840P |
| 27845 | IS1-like element IS1B family transposase | |||
| 28215 | 48 aa hypothetical protein | |||
| 28220 | M | M.YpsF1ORFBP (100% identity) | M.EcoC1738ORF28220P | |
| 28225 | 202 aa hypothetical protein | |||
| 28350 | DNA-binding protein | |||
| 28355 | M | M.YpsF1ORFDP (100% identity) | GATC | M.EcoC1738ORF28355P |
| 28360 | 284 aa hypothetical protein | |||
| plasmid unnamed2 | ||||
| 29060 | 73 aa hypothetical protein | |||
| 29065 | M | M.SflFF3ORF25360P (100% identity) | SAY | M.EcoC1738ORF29065P |
| 29070 | 101 aa hypothetical protein | |||
| plasmid unnamed3 | ||||
| 29665 | 103 aa hypothetical protein | |||
| 29670 | M | M.Ecocq9ORF29710P (100% identity) | M.EcoC1738ORF29670P | |
| 29675 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 24330 | GTPase | |||
| 24335 | R | Ssp28760MrrP (100% identity) | EcoC1738MrrP | |
| 24340 | type I restriction-modification system | |||