Escherichia coli ETEC4088 |
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Putative Escherichia coli ETEC4088 RM systems
Ref: Vereecke,N. et al. Front Microbiol 14, 1139312 (2023)
REBASE ref # 36777
| Sequence length: | GenBank #: | |
| Chromosome: | 4,978,151 bp | CP122629 |
| plasmid unnamed2: | 110,098 bp | CP122631 |
REBASE acronym: Eco4088
Org_num: 67377
All begin QDW58_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20920 | 322 aa hypothetical protein | |||
| 20925 | R | SflN101ORF11675P (100% identity) | CCANNNNNNNNNTTGG | Eco4088ORF20930P |
| 20930 | M | M.SspS13ORF3945P (100% identity) | CCANNNNNNNNNTTGG | M.Eco4088ORF20930P |
| 20935 | S | S.SflN101ORF11675P (100% identity) | CCANNNNNNNNNTTGG | S.Eco4088ORF20930P |
| 20940 | endoribonuclease SymE | |||
| 21150 | 128 aa hypothetical protein | |||
| 21155 | M | M.SflN101ORF11895P (100% identity) | TGANNNNNNTCCA | M.Eco4088ORF21155P |
| 21160 | S | S.SflN101ORF11895P (97% identity) | TGANNNNNNTCCA | S.Eco4088ORF21155P |
| 21165 | 428 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1690 | cell division protein DamX | |||
| 1695 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco4088DamP |
| 1700 | ribulose-phosphate 3-epimerase | |||
| 2220 | DUF2556 family protein | |||
| 2225 | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.Eco4088ORF2225P |
| 2230 | DNA-binding transcriptional regulator Fis | |||
| 5705 | 67 aa hypothetical protein | |||
| 5710 | M | M.Sso63633ORF22290P (100% identity) | M.Eco4088ORF5710P | |
| 5715 | phage lysis protein EssD | |||
| 9520 | phosphohydrolase | |||
| 9525 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.Eco4088DcmP |
| 9530 | V | V.SsoSE61DcmP (100% identity) | CCWGG | V.Eco4088DcmP |
| 9535 | drug/metabolite exporter YedA | |||
| 10970 | AAA family ATPase | |||
| 10975 | M | M.Eco820ORF7065P (100% identity) | TGGCCA | M.Eco4088ORF10975P |
| 10980 | replication endonuclease | |||
| 21130 | HNH endonuclease | |||
| 21135 | R | SflN101ORF11875P (100% identity) | Eco4088ORF21135P | |
| 21140 | AAA family ATPase | |||
| plasmid unnamed2 | ||||
| 24675 | 101 aa hypothetical protein | |||
| 24680 | M | M.SspPIBORF23080P (100% identity) | M.Eco4088ORF24680P | |
| 24685 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20940 | endoribonuclease SymE | |||
| 20945 | R | Ecos673GmrDP (100% identity) | Eco4088GmrDP | |
| 20950 | R | SflN101GmrSP (100% identity) | Eco4088GmrSP | |
| 20955 | cytoplasmic protein | |||
| 21135 | HNH endonuclease | |||
| 21140 | R | SflN101McrBP (100% identity) | Eco4088McrBP | |
| 21145 | R | SflN101McrCP (100% identity) | Eco4088McrCP | |
| 21150 | 128 aa hypothetical protein | |||