Escherichia coli ETEC4079 |
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Putative Escherichia coli ETEC4079 RM systems
Ref: Vereecke,N. et al. Front Microbiol 14, 1139312 (2023)
REBASE ref # 36777
| Sequence length: | GenBank #: | |
| Chromosome: | 5,181,067 bp | CP122643 |
| plasmid unnamed1: | 77,176 bp | CP122644 |
| plasmid unnamed2: | 216,724 bp | CP122645 |
| plasmid unnamed3: | 36,528 bp | CP122646 |
REBASE acronym: Eco4079
Org_num: 67375
All begin QDW55_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5910 | IS1 family transposase | |||
| 5915 | R | Sen12509ORF5865P (74% identity) | ACAYNNNNCTG | Eco4079ORF5930BP |
| 5920 | R | Eco4077ORF5935AP (100% identity) | ACAYNNNNCTG | Eco4079ORF5930AP |
| 5925 | S | S.Sen12509ORF5865P (100% identity) | ACAYNNNNCTG | S.Eco4079ORF5930P |
| 5930 | M | M.SenS688ORF13495P (100% identity) | ACAYNNNNCTG | M.Eco4079ORF5930P |
| 5935 | integrase core domain-containing protein | |||
| 15405 | GTPase family protein | |||
| 15410 | M | M.EcoW1316ORF930P (100% identity) | M.Eco4079ORF15410P | |
| 15415 | S | S.EcoW1316ORF930P (100% identity) | S.Eco4079ORF15410P | |
| 15420 | R | EcoW1316ORF930P (100% identity) | Eco4079ORF15410P | |
| 15425 | IS5-like element ISKpn26 family transposase | |||
| 19820 | type IV toxin-antitoxin system AbiEi family | |||
| 19825 | R | EcoP1525ORF5305P (100% identity) | CAACNNNNGTT | Eco4079ORF19830P |
| 19830 | M | M.EcoW1316ORF21120P (100% identity) | CAACNNNNGTT | M.Eco4079ORF19830P |
| 19835 | S | S.EcoW1316ORF21120P (100% identity) | CAACNNNNGTT | S.Eco4079ORF19830P |
| 19840 | ash family protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1740 | cell division protein DamX | |||
| 1745 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco4079DamP |
| 1750 | ribulose-phosphate 3-epimerase | |||
| 2270 | DUF2556 family protein | |||
| 2275 | M | M.EcoW1316ORF13330P (100% identity) | ATGCAT | M.Eco4079ORF2275P |
| 2280 | DNA-binding transcriptional regulator Fis | |||
| 6300 | Com family DNA-binding transcriptional | |||
| 6305 | M | M.EcoEC180ORF6030P (100% identity) | M.Eco4079ORF6305P | |
| 6310 | ribosome-associated translation inhibitor RaiA | |||
| 6800 | DUF1382 family protein | |||
| 6805 | M | M.SspPIBORF6330P (100% identity) | GATC | M.Eco4079ORF6805P |
| 6810 | PerC family transcriptional regulator | |||
| 12500 | DUF977 family protein | |||
| 12505 | M | M.EcoC4071ORF12110P (100% identity) | M.Eco4079ORF12505P | |
| 12510 | 139 aa hypothetical protein | |||
| 14125 | Shiga toxin Stx2e subunit A | |||
| 14145 | M | M.EcoW1316ORF2195P (100% identity) | M.Eco4079ORF14145P | |
| 14150 | TrmB family transcriptional regulator | |||
| 15825 | 92 aa hypothetical protein | |||
| 15830 | M | M.EcoW26ORF35400P (100% identity) | M.Eco4079ORF15830P | |
| 15835 | TrmB family transcriptional regulator | |||
| 23400 | LexA family transcriptional regulator | |||
| 23405 | M | M.Sso90ORF15820P (100% identity) | GATC | M.Eco4079ORF23405P |
| 23410 | 28 aa hypothetical protein | |||
| plasmid unnamed1 | ||||
| 25730 | 73 aa hypothetical protein | |||
| 25735 | M | M.Xca80ORFEP (100% identity) | M.Eco4079ORF25735P | |
| 25740 | 97 aa hypothetical protein | |||
| plasmid unnamed2 | ||||
| 26740 | DNA-binding protein | |||
| 26745 | M | M.Ype21801ORF197P (100% identity) | M.Eco4079ORF26745P | |
| 26750 | 273 aa hypothetical protein | |||
| 27270 | 56 aa hypothetical protein | |||
| 27275 | M | M.StyCORF187P (100% identity) | CCWGG | M.Eco4079ORF27275P |
| 27280 | thermonuclease family protein | |||
| plasmid unnamed3 | ||||
| 27380 | 101 aa hypothetical protein | |||
| 27385 | M | M.SflFF87ORF23240P (100% identity) | M.Eco4079ORF27385P | |
| 27390 | conjugative transfer relaxase/helicase TraI | |||