Escherichia coli AVS0068 |
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Putative Escherichia coli AVS0068 RM systems
Ref: Biggel,M. unpublished
REBASE ref # 31800
| Sequence length: | GenBank #: | |
| Chromosome: | 5,005,199 bp | CP124508 |
| plasmid pAVS0068-A: | 146,755 bp | CP124509 |
| plasmid pAVS0068-B: | 94,785 bp | CP124510 |
REBASE acronym: Eco0068
Org_num: 67273
All begin QJB02_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 18200 | type IV toxin-antitoxin system AbiEi family | |||
| 18205 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | Eco0068ORF18210P |
| 18210 | M | M.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | M.Eco0068ORF18210P |
| 18215 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.Eco0068ORF18210P |
| 18220 | ash family protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1705 | cell division protein DamX | |||
| 1710 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco0068DamP |
| 1715 | ribulose-phosphate 3-epimerase | |||
| 2325 | DUF2556 family protein | |||
| 2330 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.Eco0068ORF2330P |
| 2335 | DNA-binding transcriptional regulator Fis | |||
| 9795 | phosphohydrolase | |||
| 9800 | M | M.SflC32DcmP (100% identity) | CCWGG | M.Eco0068DcmP |
| 9805 | V | V.SflC32DcmP (74% identity) | CCWGG | V.Eco0068DcmP |
| 9810 | drug/metabolite exporter YedA | |||
| 13980 | DUF3927 family protein | |||
| 13995 | M | M.Ecos131ORF2315P (100% identity) | A | M.Eco0068ORF13995P |
| 14000 | TrmB family transcriptional regulator | |||
| 20140 | McrC family protein | |||
| 20145 | R | EcosS9ORF2810P (100% identity) | GGTCTC | Eco0068ORF20150P |
| 20150 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M1.Eco0068ORF20150P |
| 20155 | M | M1.EcosS9ORF2810P (100% identity) | GGTCTC | M2.Eco0068ORF20150P |
| 20160 | helix-turn-helix domain-containing protein | |||
| 20425 | 174 aa hypothetical protein | |||
| 20430 | M | M.Sen5773ORF4471P (100% identity) | RCCGGY | M.Eco0068ORF20430P |
| 20435 | ATP-binding protein | |||
| 20440 | response regulator receiver domain | |||
| 20445 | R | Ecos19ORF20635P (100% identity) | Eco0068ORF20445P | |
| 20450 | 97 aa hypothetical protein | |||
| plasmid pAVS0068-A | ||||
| 24995 | 73 aa hypothetical protein | |||
| 25000 | M | M.Sfl0030ORFCP (100% identity) | SAY | M.Eco0068ORF25000P |
| 25005 | 103 aa hypothetical protein | |||
| plasmid pAVS0068-B | ||||
| 25590 | SPFH domain-containing protein | |||
| 25605 | M | M.Eco853ORF25625P (100% identity) | M.Eco0068ORF25605P | |
| 25610 | recombination-associated protein RdgC | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 9595 | shufflon system plasmid conjugative transfer | |||
| 9600 | R | Ecost88ORF24685P (100% identity) | Eco0068ORF9605P | |
| 9605 | M | M.EcosS2ORF3675P (100% identity) | M.Eco0068ORF9605P | |
| 9610 | SpnT protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20130 | glycosyltransferase | |||
| 20135 | R | EcosS3McrBP (100% identity) | Eco0068McrBP | |
| 20140 | R | EcosS9McrCP (100% identity) | Eco0068McrCP | |
| 20145 | Alw26I/Eco31I/Esp3I family type II restriction | |||