Escherichia coli AVS0578 |
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Putative Escherichia coli AVS0578 RM systems
Ref: Biggel,M. unpublished
REBASE ref # 31800
| Sequence length: | GenBank #: | |
| Chromosome: | 5,151,251 bp | CP124374 |
| plasmid pAVS0578-B: | 94,894 bp | CP124376 |
| plasmid pAVS0578-C: | 72,619 bp | CP124377 |
| plasmid unnamed: | 99,789 bp | CP124375 |
REBASE acronym: EcoS0578
Org_num: 67303
All begin QJP97_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2845 | endoribonuclease SymE | |||
| 2850 | R | Ecou021ORF19870P (100% identity) | RTACNNNNGTG | EcoS0578ORF2860P |
| 2855 | S | S.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | S.EcoS0578ORF2860P |
| 2860 | M | M.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | M.EcoS0578ORF2860P |
| 2865 | restriction endonuclease | |||
| 4935 | ash family protein | |||
| 4940 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.EcoS0578ORF4945P |
| 4945 | M | M.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | M.EcoS0578ORF4945P |
| 4950 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | EcoS0578ORF4945P |
| 4955 | type IV toxin-antitoxin system AbiEi family | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2480 | helix-turn-helix domain-containing protein | |||
| 2485 | M | M1.EcosS9ORF2810P (100% identity) | GGTCTC | M1.EcoS0578ORF2485P |
| 2490 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M2.EcoS0578ORF2485P |
| 2495 | R | EcosS9ORF2810P (100% identity) | GGTCTC | EcoS0578ORF2485P |
| 2500 | McrC family protein | |||
| 3070 | PerC family transcriptional regulator | |||
| 3075 | M | M.Sso90ORF15820P (100% identity) | GATC | M.EcoS0578ORF3075P |
| 3080 | LexA family transcriptional regulator | |||
| 3110 | 67 aa hypothetical protein | |||
| 3115 | M | M.Ecos142ORF20090P (100% identity) | M.EcoS0578ORF3115P | |
| 3120 | phage lysis protein EssD | |||
| 8425 | 72 aa hypothetical protein | |||
| 8430 | M | M.KpnYN1ORFGP (89% identity) | M.EcoS0578ORF8430P | |
| 8435 | helix-turn-helix transcriptional regulator | |||
| 11005 | TrmB family transcriptional regulator | |||
| 11010 | M | M.EcosS9ORF10680P (100% identity) | A | M.EcoS0578ORF11010P |
| 11025 | DUF3927 family protein | |||
| 14575 | drug/metabolite exporter YedA | |||
| 14580 | V | V.SflC32DcmP (74% identity) | CCWGG | V.EcoS0578DcmP |
| 14585 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.EcoS0578DcmP |
| 14590 | phosphohydrolase | |||
| 21570 | DNA-binding transcriptional regulator Fis | |||
| 21575 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoS0578ORF21575P |
| 21580 | DUF2556 family protein | |||
| 22170 | ribulose-phosphate 3-epimerase | |||
| 22175 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoS0578DamP |
| 22180 | cell division protein DamX | |||
| plasmid pAVS0578-B | ||||
| 26480 | 86 aa hypothetical protein | |||
| 26485 | M | M.Eco312ORF23945P (99% identity) | M.EcoS0578ORF26485P | |
| 26490 | recombination-associated protein RdgC | |||
| plasmid pAVS0578-C | ||||
| 26635 | 103 aa hypothetical protein | |||
| 26640 | M | M.SflP099ORF24190P (100% identity) | M.EcoS0578ORF26640P | |
| 26645 | 73 aa hypothetical protein | |||
| plasmid unnamed | ||||
| 25835 | 103 aa hypothetical protein | |||
| 25840 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.EcoS0578ORF25840P |
| 25845 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2495 | Alw26I/Eco31I/Esp3I family type II restriction | |||
| 2500 | R | EcosS9McrCP (100% identity) | EcoS0578McrCP | |
| 2505 | R | EcosS3McrBP (100% identity) | EcoS0578McrBP | |
| 2510 | glycosyltransferase | |||
| 2860 | class I SAM-dependent DNA methyltransferase | |||
| 2865 | R | Ecou021MrrP (100% identity) | EcoS0578MrrP | |
| 2870 | BrnT family toxin | |||