Escherichia coli AVS0223 |
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Putative Escherichia coli AVS0223 RM systems
Ref: Biggel,M. unpublished
REBASE ref # 31800
| Sequence length: | GenBank #: | |
| Chromosome: | 4,967,373 bp | CP124415 |
| plasmid pAVS0223-A: | 134,299 bp | CP124416 |
| plasmid pAVS0223-B: | 108,564 bp | CP124417 |
REBASE acronym: EcoS0223
Org_num: 67281
All begin QJP60_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 16740 | endoribonuclease SymE | |||
| 16745 | R | Ecou021ORF19870P (100% identity) | RTACNNNNGTG | EcoS0223ORF16755P |
| 16750 | S | S.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | S.EcoS0223ORF16755P |
| 16755 | M | M.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | M.EcoS0223ORF16755P |
| 16760 | restriction endonuclease | |||
| 18550 | ash family protein | |||
| 18555 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.EcoS0223ORF18560P |
| 18560 | M | M.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | M.EcoS0223ORF18560P |
| 18565 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | EcoS0223ORF18560P |
| 18570 | type IV toxin-antitoxin system AbiEi family | |||
| plasmid pAVS0223-A | ||||
| 24875 | IS1-like element IS1A family transposase | |||
| 24880 | R | KpnKPH1ORF27575P (100% identity) | CAAYNNNNNNCTGG | EcoS0223ORF24890P |
| 24885 | S | S.SenceORFJP (100% identity) | CAAYNNNNNNCTGG | S1.EcoS0223ORF24890P |
| 24890 | M | M.SenceORFJP (99% identity) | CAAYNNNNNNCTGG | M.EcoS0223ORF24890P |
| 24895 | type II toxin-antitoxin system Phd/YefM family | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3510 | drug/metabolite exporter YedA | |||
| 3515 | V | V.SflC32DcmP (74% identity) | CCWGG | V.EcoS0223DcmP |
| 3520 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.EcoS0223DcmP |
| 3525 | phosphohydrolase | |||
| 10670 | DNA-binding transcriptional regulator Fis | |||
| 10675 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoS0223ORF10675P |
| 10680 | DUF2556 family protein | |||
| 11280 | ribulose-phosphate 3-epimerase | |||
| 11285 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoS0223DamP |
| 11290 | cell division protein DamX | |||
| 16500 | helix-turn-helix domain-containing protein | |||
| 16505 | M | M1.EcosS9ORF2810P (100% identity) | GGTCTC | M1.EcoS0223ORF16505P |
| 16510 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M2.EcoS0223ORF16505P |
| 16515 | R | EcosS9ORF2810P (100% identity) | GGTCTC | EcoS0223ORF16505P |
| 16520 | McrC family protein | |||
| 21795 | 71 aa hypothetical protein | |||
| 21800 | M | M.KpnYN1ORFGP (89% identity) | M.EcoS0223ORF21800P | |
| 21805 | helix-turn-helix transcriptional regulator | |||
| plasmid pAVS0223-A | ||||
| 24815 | 73 aa hypothetical protein | |||
| 24820 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.EcoS0223ORF24820P |
| 24825 | 103 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 16515 | Alw26I/Eco31I/Esp3I family type II restriction | |||
| 16520 | R | EcosS9McrCP (100% identity) | EcoS0223McrCP | |
| 16525 | R | EcosS3McrBP (100% identity) | EcoS0223McrBP | |
| 16530 | glycosyltransferase | |||
| 16755 | class I SAM-dependent DNA methyltransferase | |||
| 16760 | R | Ecou021MrrP (100% identity) | EcoS0223MrrP | |
| 16765 | BrnT family toxin | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| plasmid pAVS0223-B | ||||
| 25510 | 76 aa hypothetical protein | |||
| 25515 | M | M.Sso524ORF460P (100% identity) | GATC | M.EcoS0223ORF25515P |
| 25520 | 269 aa hypothetical protein | |||