Helicobacter pylori HP22 |
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Putative Helicobacter pylori HP22 RM systems
Ref: Nguyen,V.D. et al. unpublished
REBASE ref # 36567
Complete sequence: 1,582,823 bp
GenBank #: CP122515
REBASE acronym: HpyHP22
Org_num: 66628
All begin QCM05_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 130 | motility associated factor glycosyltransferase | |||
| 135 | R | HpyU311ORF2230P (87% identity) | CACNNNNNTC | HpyHP22ORF140P |
| 140 | M | M.HpyR04ORF2265P (92% identity) | CACNNNNNTC | M.HpyHP22ORF140P |
| 145 | S | S.HpyUM037ORF3770P (98% identity) | CACNNNNNTC | S.HpyHP22ORF140P |
| 155 | RNA degradosome polyphosphate kinase | |||
| 2720 | SprT family zinc-dependent metalloprotease | |||
| 2725 | R | HpyPF57ORF7325P (96% identity) | HpyHP22ORF2730P | |
| 2730 | M | M.HpyMA08V (95% identity) | M.HpyHP22ORF2730P | |
| 2735 | S | S.HpyH004ORF6685P (63% identity) | S.HpyHP22ORF2730P | |
| 2740 | FAD-dependent thymidylate synthase | |||
| 7485 | type I restriction endonuclease | |||
| 7490 | S | S.HpyBS26ORF3020P (100% identity) | S.HpyHP22ORF7495P | |
| 7495 | M | M.HpyBS26ORF3020P (100% identity) | M.HpyHP22ORF7495P | |
| 7500 | DNA cytosine methyltransferase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 25 | catalase | |||
| 30 | R | HpyBS26ORF4925P (99% identity) | ACGT | HpyHP22ORF35P |
| 35 | M | M.HpyBS26ORF4925P (99% identity) | ACGT | M.HpyHP22ORF35P |
| 40 | GIY-YIG nuclease family protein | |||
| 35 | DNA cytosine methyltransferase | |||
| 40 | R | HpyBS26ORF4935P (100% identity) | ACNGT | HpyHP22ORF45P |
| 45 | M | M.HpyBS26ORF4935P (99% identity) | ACNGT | M.HpyHP22ORF45P |
| 50 | translational GTPase TypA | |||
| 55 | glycosyltransferase family 9 protein | |||
| 60 | M | M.HpyBS26ORF4950P (99% identity) | ATTAAT | M.HpyHP22ORF60P |
| 65 | Hop family outer membrane protein HopJ/HopK | |||
| 995 | AAA family ATPase | |||
| 1000 | M | M.HpyKH36ORFSP (98% identity) | CCGG | M.HpyHP22ORF1000P |
| 1005 | R | HpyBS26ORF5900P (100% identity) | CCGG | HpyHP22ORF1000P |
| 1010 | 204 aa hypothetical protein | |||
| 1010 | 204 aa hypothetical protein | |||
| 1015 | M | M.HpyBS26ORF5915P (100% identity) | TCGA | M.HpyHP22ORF1015P |
| 1020 | exodeoxyribonuclease VII large subunit | |||
| 1830 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 1835 | M | M.HpyK007II (97% identity) | GATC | M.HpyHP22ORF1835P |
| 1840 | R | Hpy55ORF149P (97% identity) | GATC | HpyHP22ORF1835P |
| 1850 | ACP S-malonyltransferase | |||
| 1995 | sodium/proline symporter PutP | |||
| 2000 | M | M1.Hpyfe104ORF6710P (98% identity) | M1.HpyHP22ORF2000P | |
| 2005 | M | M2.HpyOK312ORFBP (97% identity) | CCTC | M2.HpyHP22ORF2000P |
| 2010 | agmatine deiminase | |||
| 2055 | DNA methyltransferase | |||
| 2060 | R | Hpyfe78ORF7050P (99% identity) | GANTC | HpyHP22ORF2065P |
| 2065 | M | M.Hpyfe89ORF7150P (100% identity) | GANTC | M.HpyHP22ORF2065P |
| 2070 | 351 aa hypothetical protein | |||
| 2070 | 351 aa hypothetical protein | |||
| 2075 | RM | HpySG03ORF445P (92% identity) | HpyHP22ORF2075P | |
| 2080 | carboxylating nicotinate-nucleotide | |||
| 2130 | copper response regulator transcription factor | |||
| 2135 | R | HpyT027VIIIP (97% identity) | GAAGA | HpyHP22ORF2140P |
| 2140 | M | M2.HpyCHN3V (98% identity) | GAAGA | M1.HpyHP22ORF2140P |
| 2145 | M | M2.HpyBS26ORF7050P (99% identity) | GAAGA | M2.HpyHP22ORF2140P |
| 2150 | site-specific DNA-methyltransferase | |||
| 2615 | 131 aa hypothetical protein | |||
| 2620 | R | HpyMA22VIIIP (99% identity) | TGCA | HpyHP22ORF2625P |
| 2625 | M | M.HpyOK304ORFJP (98% identity) | TGCA | M.HpyHP22ORF2625P |
| 2630 | 67 aa hypothetical protein | |||
| 2805 | 713 aa hypothetical protein | |||
| 2810 | RM | Hpyfe82ORF70P (93% identity) | HpyHP22ORF2810P | |
| 2815 | reverse transcriptase domain-containing protein | |||
| 2900 | outer membrane protein | |||
| 2905 | R | HpyBS26ORF160P (99% identity) | CCATC | HpyHP22ORF2910P |
| 2910 | M | M1.HpyBS26ORF160P (100% identity) | CCATC | M1.HpyHP22ORF2910P |
| 2915 | M | M1.HpyV004III (98% identity) | CCATC | M2.HpyHP22ORF2910P |
| 2920 | LptF/LptG family permease | |||
| 3050 | VRR-NUC domain-containing protein | |||
| 3055 | R | HpysHP34ORF1435P (100% identity) | HpyHP22ORF3060P | |
| 3060 | M | M.HpysHP34ORF1435P (100% identity) | M.HpyHP22ORF3060P | |
| 3065 | S | S.HpyBS26ORF310P (99% identity) | S.HpyHP22ORF3060P | |
| 3070 | DNA polymerase I | |||
| 3340 | UDP-N-acetylmuramate dehydrogenase | |||
| ??? | M | M.HpyBS26ORF585P (100% identity) | M.HpyHP22ORF3345P | |
| 3350 | R | HpyBS26ORF585P (100% identity) | HpyHP22ORF3345P | |
| 3355 | glycosyltransferase family 8 protein | |||
| 4185 | serine O-acetyltransferase | |||
| 4190 | R | HpyBS26ORF1440P (99% identity) | CATG | HpyHP22ORF4195P |
| 4195 | M | M.Hpyfe55ORF1430P (99% identity) | CATG | M.HpyHP22ORF4195P |
| 4200 | HAD family hydrolase | |||
| 4650 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 4655 | M | M.Hpyfe48ORF1855P (98% identity) | GCGC | M.HpyHP22ORF4655P |
| 4660 | 144 aa hypothetical protein | |||
| 4835 | Laminin subunit alpha-2 precursor | |||
| 4840 | R | Hpy155ORF14820P (99% identity) | TCNNGA | HpyHP22ORF4845P |
| 4845 | M | M.HpyV005XII (100% identity) | TCNNGA | M.HpyHP22ORF4845P |
| 4850 | acetyl-CoA carboxylase biotin carboxylase | |||
| 5505 | ATP-dependent helicase | |||
| 5510 | M | M.HpyCHN2XII (98% identity) | GTNNAC | M.HpyHP22ORF5510P |
| 5515 | R | HpyV006XIP (98% identity) | GTNNAC | HpyHP22ORF5510P |
| 5520 | flagellar hook protein FlgE | |||
| 5705 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 5710 | M | M.HpyBS26ORF4830P (100% identity) | GTAC | M.HpyHP22ORF5710P |
| 5715 | R | HpyBS26ORF4830P (98% identity) | GTAC | HpyHP22ORF5710P |
| 5720 | peptidoglycan DD-metalloendopeptidase Csd1 | |||
| 6530 | (Fe-S)-binding protein | |||
| 6535 | RM | HpyMA22ORF3245P (68% identity) | HpyHP22ORF6535P | |
| 6540 | outer membrane protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2145 | site-specific DNA-methyltransferase | |||
| ??? | M | M.Hpyfe78ORF7135P (95% identity) | M.HpyHP22ORF2150P | |
| 2160 | R | HpyMA06ORF195P (93% identity) | HpyHP22ORF2150P | |
| 2165 | rod shape-determining protein MreC | |||
| 2790 | ATP-dependent DNA helicase RecG | |||
| 2795 | M | M.HpyC007ORF7415P (96% identity) | GACC | M.HpyHP22ORF2795P |
| 2800 | R | HpyV005ORF7210P (97% identity) | GACC | HpyHP22ORF2795P |
| 2805 | 713 aa hypothetical protein | |||
| 3420 | type III restriction endonuclease subunit R | |||
| 3425 | R | HpyV009ORF6690P (95% identity) | HpyHP22ORF3430P | |
| 3430 | M | M.Hpyfe92ORF650P (95% identity) | M.HpyHP22ORF3430P | |
| 3435 | DNA/RNA non-specific endonuclease | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 5750 | type I glutamate--ammonia ligase | |||
| 5755 | R | HpyBS26GmrSDP (98% identity) | HpyHP22GmrSD2P | |
| 5760 | 50S ribosomal protein L9 | |||
| 6335 | tetratricopeptide repeat protein | |||
| 6340 | R | Hpy04GmrSDP (93% identity) | HpyHP22GmrSDP | |
| 6345 | NAD(P)H-dependent oxidoreductase | |||