Helicobacter pylori HP34 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Helicobacter pylori HP34 RM systems
Ref: Nguyen,V.D. et al. unpublished
REBASE ref # 36567
Complete sequence: 1,600,602 bp
GenBank #: CP122516
REBASE acronym: HpysHP34
Org_num: 66629
All begin QCM40_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 1755 | FAD-dependent thymidylate synthase | |||
| 1760 | S | S.HpyU425ORF7440P (97% identity) | CRTANNNNNNNTTTA | S.HpysHP34ORF1765P |
| 1765 | M | M.Hpyfe4ORF7425P (97% identity) | CRTANNNNNNNTTTA | M.HpysHP34ORF1765P |
| 1770 | R | HpyMA08VP (96% identity) | CRTANNNNNNNTTTA | HpysHP34ORF1765P |
| 1775 | SprT family zinc-dependent metalloprotease | |||
| 4275 | RNA degradosome polyphosphate kinase | |||
| 4285 | S | S.HpyBS21ORF5155P (99% identity) | CACNNNNNTAY | S.HpysHP34ORF4290P |
| 4290 | M | M.Hpyfe64ORF3230P (94% identity) | CACNNNNNTAY | M.HpysHP34ORF4290P |
| 4295 | R | Hpyfe78ORF2100P (66% identity) | CACNNNNNTAY | HpysHP34ORF4290P |
| 4300 | motility associated factor glycosyltransferase | |||
| 5955 | outer membrane beta-barrel protein HofF | |||
| 5960 | S | S.HpysHP34ORF6255P (98% identity) | CTANNNNNNNCTC | S.HpysHP34ORF5960P |
| 5965 | heavy metal translocating P-type ATPase | |||
| 6240 | hydroxyethylthiazole kinase | |||
| 6245 | R | HpySP705IVP (93% identity) | CTANNNNNNCTC | HpysHP34ORF6255P |
| 6250 | S | S.HpysHP34ORF5960P (98% identity) | CTANNNNNNCTC | S.HpysHP34ORF6255P |
| 6255 | M | M.HpyHP22ORF7495P (97% identity) | CTANNNNNNCTC | M.HpysHP34ORF6255P |
| 6260 | DNA cytosine methyltransferase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 5 | outer membrane beta-barrel protein | |||
| 10 | M | M.HpyU408X (99% identity) | TCNGA | M.HpysHP34ORF10P |
| 15 | R | HpyNG10XIIP (98% identity) | TCNGA | HpysHP34ORF10P |
| 20 | purine-nucleoside phosphorylase | |||
| 185 | HAD family hydrolase | |||
| 190 | M | M.HpyMT5105I (98% identity) | CATG | M.HpysHP34ORF190P |
| 195 | 46 aa hypothetical protein | |||
| 905 | S41 family peptidase | |||
| 910 | R | HpySW12IVP (48% identity) | R1.HpysHP34ORF920P | |
| 915 | R | HpyPO02ORF6435P (99% identity) | R2.HpysHP34ORF920P | |
| 920 | M | M.Hpyfe77ORF7155P (40% identity) | M.HpysHP34ORF920P | |
| 925 | DNA methyltransferase | |||
| 925 | DNA methyltransferase | |||
| ??? | RM | HpyV003ORF270P (89% identity) | HpysHP34ORF930P | |
| 940 | carboxylating nicotinate-nucleotide | |||
| 990 | copper response regulator transcription factor | |||
| 995 | R | HpySP210VP (98% identity) | GAAGA | HpysHP34ORF1000P |
| 1000 | M | M1.HpySP703XIV (98% identity) | GAAGA | M1.HpysHP34ORF1000P |
| 1005 | M | M2.Hpyfe23ORF7115P (99% identity) | GAAGA | M2.HpysHP34ORF1000P |
| 1010 | site-specific DNA-methyltransferase | |||
| 1425 | DNA polymerase I | |||
| 1430 | S | S.Hpy17874ORF3814P (63% identity) | S.HpysHP34ORF1435P | |
| 1435 | M | M.HpyK012ORF6910P (100% identity) | M.HpysHP34ORF1435P | |
| 1440 | R | HpySP709ORF7225P (100% identity) | HpysHP34ORF1435P | |
| 1445 | VRR-NUC domain-containing protein | |||
| 1575 | LptF/LptG family permease | |||
| 1580 | M | M1.HpyT028V (99% identity) | CCATC | M1.HpysHP34ORF1580P |
| 1585 | M | M1.Hpyfe70ORF135P (100% identity) | CCATC | M2.HpysHP34ORF1580P |
| 1590 | R | Hpy5086ORF1440P (97% identity) | CCATC | HpysHP34ORF1580P |
| 1595 | outer membrane protein | |||
| 1680 | RNA-directed DNA polymerase | |||
| 1685 | RM | Hpyfe38ORF55P (87% identity) | HpysHP34ORF1685P | |
| 1690 | type III restriction-modification system | |||
| 1855 | 67 aa hypothetical protein | |||
| 1860 | M | M.Hpyfe68ORF7355P (99% identity) | TGCA | M.HpysHP34ORF1860P |
| 1865 | R | Hpyfe65ORF7375P (97% identity) | TGCA | HpysHP34ORF1860P |
| 1870 | cytochrome c1 | |||
| 2370 | agmatine/peptidylarginine deiminase | |||
| 2375 | M | M1.HpyJO6V (98% identity) | CCTC | M1.HpysHP34ORF2375P |
| 2380 | M | M2.HpySP304VIIP (98% identity) | CCTC | M2.HpysHP34ORF2375P |
| 2385 | R | HpyCRI5VP (90% identity) | CCTC | HpysHP34ORF2375P |
| 2390 | site-specific DNA-methyltransferase | |||
| 2385 | HNH endonuclease | |||
| 2390 | M | M.Hpy155ORF1500P (98% identity) | GTSAC | M.HpysHP34ORF2390P |
| 2395 | R | Hpyfe8ORF160P (100% identity) | GTSAC | HpysHP34ORF2390P |
| 2400 | DNA cytosine methyltransferase | |||
| 2585 | HTH domain-containing protein | |||
| 2590 | M | M.HpyK028IX (97% identity) | GATC | M.HpysHP34ORF2590P |
| 2595 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 3405 | exodeoxyribonuclease VII large subunit | |||
| 3410 | R | HpyGE2ORF1285P (87% identity) | CCGG | HpysHP34ORF3415P |
| 3415 | M | M.HpyV006III (100% identity) | CCGG | M.HpysHP34ORF3415P |
| 3420 | AAA family ATPase | |||
| 4370 | Hop family outer membrane protein HopJ/HopK | |||
| 4375 | M | M.HpyT008II (97% identity) | ATTAAT | M.HpysHP34ORF4375P |
| 4380 | lipopolysaccharide heptosyltransferase family | |||
| 4385 | translational GTPase TypA | |||
| 4390 | M | M.HpyU424II (98% identity) | ACNGT | M.HpysHP34ORF4390P |
| 4395 | R | HpyAL3XIIIP (98% identity) | ACNGT | HpysHP34ORF4390P |
| 4400 | DNA cytosine methyltransferase | |||
| 4395 | GIY-YIG nuclease family protein | |||
| 4400 | M | M.Hpyfe115ORF4840P (98% identity) | ACGT | M.HpysHP34ORF4400P |
| 4405 | R | HpyK154ORF3315P (98% identity) | ACGT | HpysHP34ORF4400P |
| 4410 | catalase | |||
| 4500 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 4505 | M | M.HpySG06VIII (97% identity) | GTAC | M.HpysHP34ORF4505P |
| 4510 | R | HpyMA18XIIP (98% identity) | GTAC | HpysHP34ORF4505P |
| 4515 | peptidoglycan DD-metalloendopeptidase Csd1 | |||
| 5355 | (Fe-S)-binding protein | |||
| 5360 | RM | HpyT011ORF3105P (84% identity) | HpysHP34ORF5360P | |
| 5365 | 83 aa hypothetical protein | |||
| 6255 | type I restriction-modification system subunit | |||
| 6260 | M | M.Hpyfe127ORF3075P (100% identity) | GGCC | M.HpysHP34ORF6260P |
| 6265 | R | HpyHP22ORF7500P (100% identity) | GGCC | HpysHP34ORF6260P |
| 6270 | phosphatase PAP2 family protein | |||
| 6540 | flagellar hook protein FlgE | |||
| 6545 | R | HpySG18XP (96% identity) | GTNNAC | HpysHP34ORF6550P |
| 6550 | M | M.HpyAL2X (98% identity) | GTNNAC | M.HpysHP34ORF6550P |
| 6555 | ATP-dependent helicase | |||
| 7220 | methyltransferase | |||
| 7225 | M | M.HpySG03XV (95% identity) | TCNNGA | M.HpysHP34ORF7225P |
| ??? | R | HpyCO3XP (98% identity) | TCNNGA | HpysHP34ORF7225P |
| 7235 | Laminin subunit alpha-2 precursor | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1005 | site-specific DNA-methyltransferase | |||
| ??? | M | M.HpyTW07ORF200P (95% identity) | M.HpysHP34ORF1010P | |
| 1020 | R | HpyC010ORF545P (93% identity) | HpysHP34ORF1010P | |
| 1025 | rod shape-determining protein MreC | |||
| 1685 | class I SAM-dependent DNA methyltransferase | |||
| 1690 | R | HpyT030ORF7100P (94% identity) | HpysHP34ORF1695P | |
| ??? | M | M.HpyU011ORF7420P (97% identity) | M.HpysHP34ORF1695P | |
| 1705 | ATP-dependent DNA helicase RecG | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4695 | type I glutamate--ammonia ligase | |||
| 4700 | R | Hpyfe27GmrSDP (80% identity) | HpysHP34GmrSD2P | |
| 4705 | 50S ribosomal protein L9 | |||
| 5160 | tetratricopeptide repeat protein | |||
| 5165 | R | Hpyfe68GmrSD2P (94% identity) | HpysHP34GmrSDP | |
| 5170 | NAD(P)H-dependent oxidoreductase | |||