Helicobacter pylori ATCC 49503 |
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Putative Helicobacter pylori ATCC 49503 RM systems
Ref: Suzuki,M. et al. unpublished
REBASE ref # 36473
Complete sequence: 1,625,243 bp
GenBank #: AP027941
REBASE acronym: Hpy49503
Org_num: 66121
All begin ATCC49503_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 5470 | 137 aa hypothetical protein | |||
| 5480 | S | S.HpyGE21ORF6935P (98% identity) | S.Hpy49503ORF5490P | |
| 5490 | M | M.HpyF014ORF6995P (97% identity) | M.Hpy49503ORF5490P | |
| 5500 | 75 aa hypothetical protein | |||
| 7680 | Integral membrane protein | |||
| 7690 | M | M.HpyU123XV (96% identity) | M.Hpy49503ORF7690P | |
| 7700 | S | S.Hpy49503ORF8310P (23% identity) | S1.Hpy49503ORF7690P | |
| 7710 | S | S.HpyU420ORF3630P (67% identity) | S2.Hpy49503ORF7690P | |
| 7720 | R | HpyKG2ORF2620P (86% identity) | Hpy49503ORF7690P | |
| 7740 | Hydroxyethylthiazole kinase ThiM | |||
| 8300 | Cadmium, zinc and cobalt-transporting ATPase | |||
| 8310 | S | S.HpyIS11ORF2850P (95% identity) | CCANNNNNNTTA | S.Hpy49503ORF8310P |
| 8320 | Outer membrane protein HofF | |||
| 11910 | PH domain-containing protein | |||
| ??? | R | HpyIS11ORF2280P (92% identity) | Hpy49503ORF11940P | |
| 11940 | M | M.HpyIS1ORF2170P (68% identity) | M.Hpy49503ORF11940P | |
| 11950 | 165 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 100 | 516 aa hypothetical protein | |||
| ??? | RM | HpyH021XV (82% identity) | Hpy49503ORF110P | |
| 140 | 39 aa hypothetical protein | |||
| 600 | Amidophosphoribosyltransferase | |||
| 610 | RM | HpyU424ORF7050P (96% identity) | Hpy49503ORF610P | |
| 620 | S | S.HpyAR1ORF7235P (95% identity) | CYANNNNNNTGA | S.Hpy49503ORF610P |
| 630 | DNA polymerase I PolA | |||
| 2210 | DNA helicase | |||
| ??? | M | M.HpyP009IX (97% identity) | GTNNAC | M.Hpy49503ORF2220P |
| 2240 | R | HpyKH7ORFGP (94% identity) | GTNNAC | Hpy49503ORF2220P |
| 2250 | 437 aa hypothetical protein | |||
| 2740 | Serine O-acetyltransferase CysE | |||
| ??? | R | HpyPE124IP (95% identity) | CATG | Hpy49503ORF2770P |
| ??? | M | M.HpyU001I (95% identity) | CATG | M.Hpy49503ORF2770P |
| 2790 | 166 aa hypothetical protein | |||
| 3740 | FlgM protein | |||
| 3750 | M | M.HpySP15XIV (94% identity) | M.Hpy49503ORF3750P | |
| 3760 | flagellar protein FlgN | |||
| 5890 | 156 aa hypothetical protein | |||
| 5900 | M | M2.HpyU009V (100% identity) | GAAGA | M1.Hpy49503ORF5900P |
| ??? | M | M1.HpyP003VI (98% identity) | GAAGA | M2.Hpy49503ORF5900P |
| 5930 | R | HpyMM03VIIIP (98% identity) | GAAGA | Hpy49503ORF5900P |
| 5940 | OmpR family DNA-binding response regulator | |||
| 6050 | Nicotinate-nucleotide pyrophosphorylase NadC | |||
| ??? | RM | Hpy29ORF6870P (88% identity) | Hpy49503ORF6060P | |
| 6080 | Adenine specific DNA methyltransferase | |||
| 6070 | 669 aa hypothetical protein | |||
| 6080 | M | M.Hpy42KORF6835P (99% identity) | GANTC | M.Hpy49503ORF6080P |
| 6090 | R | HpyIceORFGP (96% identity) | GANTC | Hpy49503ORF6080P |
| 6100 | Carboxyl-terminal protease Prc | |||
| 6800 | 46 aa hypothetical protein | |||
| 6810 | R | Hpy444A6ORFPP (100% identity) | GATATC | Hpy49503ORF6820P |
| 6820 | M | M.Hpy444A6ORFPP (99% identity) | M.Hpy49503ORF6820P | |
| 6830 | Glycosyltransferase 9 family protein | |||
| 9610 | 140 aa hypothetical protein | |||
| ??? | RM | HpySP02ORF3095P (89% identity) | Hpy49503ORF9620P | |
| 9660 | Anaerobic glycerol-3-phosphate dehydrogenase | |||
| 11450 | PG-modifying enzyme, HdpA | |||
| ??? | R | Hpy45kORF4110P (96% identity) | GTAC | Hpy49503ORF11490P |
| 11490 | M | M.HpySP503XII (99% identity) | GTAC | M.Hpy49503ORF11490P |
| 11500 | DNA gyrase subunit B GyrB | |||
| 11700 | Catalase-like protein | |||
| 11710 | R | Hpy479CORFMP (90% identity) | ACGT | Hpy49503ORF11720P |
| 11720 | M | M.HpyL024ORF4170P (98% identity) | ACGT | M.Hpy49503ORF11720P |
| 11730 | 74 aa hypothetical protein | |||
| 11720 | Cytosine-specific methyltransferase | |||
| ??? | R | HpySWT15VIP (99% identity) | ACNGT | Hpy49503ORF11750P |
| ??? | M | M.HpyBGR8II (98% identity) | ACNGT | M.Hpy49503ORF11750P |
| 11770 | GTP-binding protein TypA | |||
| 11770 | GTP-binding protein TypA | |||
| 11780 | M | M.HpyR08ORF2190P (64% identity) | M.Hpy49503ORF11780P | |
| 11790 | Outer membrane protein | |||
| 12160 | Biotin carboxylase AccC | |||
| 12170 | M | M.HpyL025IX (98% identity) | TCNNGA | M.Hpy49503ORF12170P |
| ??? | R | HpyBR17ORF695P (98% identity) | TCNNGA | Hpy49503ORF12170P |
| 12200 | Laminin subunit alpha-2 | |||
| 13280 | ATP-dependent Clp protease, ATP-binding subunit | |||
| 13290 | M | M.Hpyfe92ORF6045P (99% identity) | CCGG | M.Hpy49503ORF13290P |
| ??? | R | Hpy5108ORF7845P (95% identity) | CCGG | Hpy49503ORF13290P |
| 13320 | 204 aa hypothetical protein | |||
| 13320 | 204 aa hypothetical protein | |||
| 13330 | M | M.HpyF021IX (96% identity) | TCGA | M.Hpy49503ORF13330P |
| 13340 | Exodeoxyribonuclease VII large subunit XseA | |||
| 15130 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| ??? | M | M.Hpy60190ORFAP (97% identity) | GATC | M.Hpy49503ORF15140P |
| 15160 | 216 aa hypothetical protein | |||
| 15610 | Sodium/proline symporter PutP | |||
| 15620 | M | M.HpySP801VI (98% identity) | CCTTC | M.Hpy49503ORF15620P |
| ??? | R | Hpy280AORFIP (99% identity) | CCTTC | Hpy49503ORF15620P |
| 15660 | 187 aa hypothetical protein | |||
| 15650 | 154 aa hypothetical protein | |||
| ??? | R | Hpyfe32ORF6935P (98% identity) | GTSAC | Hpy49503ORF15670P |
| 15670 | M | M.HpyU101VIII (90% identity) | GTSAC | M.Hpy49503ORF15670P |
| 15680 | Restriction endonuclease | |||
| 15670 | type II DNA modification enzyme | |||
| 15680 | R | HpyLI03XP (88% identity) | CCTC | Hpy49503ORF15690P |
| 15690 | M | M2.HpySW07IXP (98% identity) | CCTC | M1.Hpy49503ORF15690P |
| 15700 | M | M1.HpyCOL210VI (99% identity) | CCTC | M2.Hpy49503ORF15690P |
| 15710 | Agmatine deiminase | |||
| 16710 | Ubiquinol cytochrome c oxidoreductase, | |||
| 16720 | R | HpyGE2ORF7560P (99% identity) | Hpy49503ORF16720P | |
| 16730 | IS605 transposase TnpA | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 5860 | Rod shape-determining protein MreC | |||
| 5870 | R | HpyGE1ORF6780P (94% identity) | Hpy49503ORF5880P | |
| ??? | M | M.HpySP209ORF6675P (95% identity) | M.Hpy49503ORF5880P | |
| 5900 | Type IIS restriction enzyme M2 protein | |||
| 10450 | Proton-translocating Cytochrome Oxidase | |||
| ??? | M | M.HpyU104XII (92% identity) | M.Hpy49503ORF10460P | |
| 10480 | R | HpyS64ORFUP (95% identity) | Hpy49503ORF10460P | |
| 10490 | 2-oxoglutarate-acceptor oxidoreductase subunit | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 10080 | Modulator of drug activity | |||
| 10090 | R | HpyGRE040GmrSD2P (95% identity) | Hpy49503GmrSDP | |
| 10100 | sel1 repeat family protein | |||