Escherichia coli EC556 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli EC556 RM systems
Ref: Sato,T. et al. unpublished
REBASE ref # 36396
| Sequence length: | GenBank #: | |
| Chromosome: | 5,047,835 bp | AP027440 |
| plasmid pEC556_1: | 88,955 bp | AP027439 |
REBASE acronym: EcoEC556
Org_num: 65788
All begin MUTS11_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 14150 | 290 aa hypothetical protein | |||
| 14160 | M | M.EcoW1316ORF930P (100% identity) | M.EcoEC556ORF14160P | |
| 14170 | S | S.EcoW1316ORF930P (100% identity) | S.EcoEC556ORF14160P | |
| 14180 | R | EcoW1316ORF930P (100% identity) | EcoEC556ORF14160P | |
| 14190 | IS5 family transposase | |||
| 14190 | IS5 family transposase | |||
| 14200 | M | M.EcoEC581ORF6620P (100% identity) | M.EcoEC556ORF14200P | |
| 14210 | 437 aa hypothetical protein | |||
| 23430 | 260 aa hypothetical protein | |||
| 23440 | R | EcoEC581ORF45130P (100% identity) | CAACNNNNGTT | EcoEC556ORF23450P |
| 23450 | M | M.EcoW1316ORF21120P (100% identity) | CAACNNNNGTT | M.EcoEC556ORF23450P |
| 23460 | S | S.EcoW1316ORF21120P (100% identity) | CAACNNNNGTT | S.EcoEC556ORF23450P |
| 23470 | 52 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4380 | phosphohydrolase | |||
| 4390 | M | M.EcoW1316DcmP (100% identity) | CCWGG | M.EcoEC556DcmP |
| 4400 | V | V.EcoW1316DcmP (100% identity) | V.EcoEC556DcmP | |
| 4410 | inner membrane transporter YedA | |||
| 8670 | 107 aa hypothetical protein | |||
| ??? | M | M.SsoSE61ORF20220P (100% identity) | M.EcoEC556ORF8680P | |
| 8690 | 60 aa hypothetical protein | |||
| 14960 | 92 aa hypothetical protein | |||
| 14970 | M | M.EcoW26ORF35400P (100% identity) | M.EcoEC556ORF14970P | |
| 14980 | 65 aa hypothetical protein | |||
| 17010 | 505 aa hypothetical protein | |||
| 17020 | M | M.EcoEC581ORF51570P (100% identity) | GATC | M.EcoEC556ORF17020P |
| 17030 | 75 aa hypothetical protein | |||
| 36500 | cell division protein DamX | |||
| ??? | M | M.SspPIBDamP (100% identity) | GATC | M.EcoEC556DamP |
| 36520 | ribulose-phosphate 3-epimerase | |||
| 37490 | acrEF/envCD operon transcriptional regulator | |||
| 37500 | M | M.EcoW1316ORF13330P (100% identity) | ATGCAT | M.EcoEC556ORF37500P |
| 37510 | DNA-binding protein Fis | |||
| 41030 | 5-nucleotidase | |||
| ??? | R | EcoR3ORF16890P (100% identity) | GAAC | EcoEC556ORF41040P |
| 41050 | phage integrase | |||
| 44960 | 98 aa hypothetical protein | |||
| 44970 | M | M.SenYU39ORF1896P (100% identity) | M.EcoEC556ORF44970P | |
| 44980 | ribosome-associated factor Y | |||
| plasmid pEC556_1 | ||||
| 2460 | 73 aa hypothetical protein | |||
| 2470 | M | M.Sso8ORF23800P (100% identity) | SAY | M.EcoEC556ORF2470P |
| 2480 | 308 aa hypothetical protein | |||