Dickeya fangzhongdai ZXC1 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Dickeya fangzhongdai ZXC1 RM systems
Ref: Huang,S. et al. Plant Dis (2021) In press
REBASE ref # 36392
Complete sequence: 5,129,951 bp
GenBank #: CP119773
REBASE acronym: DfaZXC1
Org_num: 65769
All begin PQ617_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 9155 | integrase arm-type DNA-binding domain-containing | |||
| 9160 | R | DchL11ORFFP (89% identity) | DfaZXC1ORF9165P | |
| 9165 | M | M.Kpn9637I (94% identity) | M.DfaZXC1ORF9165P | |
| 9170 | S | S.MvaIT4I (55% identity) | S.DfaZXC1ORF9165P | |
| 9175 | AAA family ATPase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4870 | ribulose-phosphate 3-epimerase | |||
| 4875 | M | M.DspS1ORFAP (100% identity) | GATC | M.DfaZXC1DamP |
| 4880 | SPOR domain-containing protein | |||
| 9180 | 283 aa hypothetical protein | |||
| 9185 | R | Dch1ORF10230P (98% identity) | DfaZXC1ORF9185P | |
| 9190 | 191 aa hypothetical protein | |||
| 9335 | LysE/ArgO family amino acid transporter | |||
| 9340 | V | V.DspMK7ORFAP (100% identity) | V.DfaZXC1ORF9345P | |
| 9345 | M | M.DspMK7ORFAP (99% identity) | M.DfaZXC1ORF9345P | |
| 9350 | MvaI/BcnI family restriction endonuclease | |||
| 9345 | DNA cytosine methyltransferase | |||
| 9350 | R | DfaOnc5ORF2190P (100% identity) | DfaZXC1ORF9350P | |
| 9355 | MFS transporter | |||
| 21720 | 174 aa hypothetical protein | |||
| 21725 | M | M.DfaQZH3ORF15835P (72% identity) | M.DfaZXC1ORF21725P | |
| 21730 | lysozyme | |||
| 21775 | 115 aa hypothetical protein | |||
| 21780 | M | M.Dda898ORFGP (92% identity) | M1.DfaZXC1ORF21780P | |
| 21785 | M | M.Dfa14bORFAP (70% identity) | M2.DfaZXC1ORF21780P | |
| 21790 | ASCH domain-containing protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 9825 | site-specific integrase | |||
| 9830 | M | M.Dze3531ORFEP (96% identity) | M.DfaZXC1ORF9830P | |
| 9835 | R | PcaBZA12ORF12200P (99% identity) | DfaZXC1ORF9830P | |
| 9840 | IS256 family transposase | |||
| 9840 | IS256 family transposase | |||
| 9845 | R | PcaBZA12ORF12185P (99% identity) | DfaZXC1ORF9850P | |
| 9850 | M | M.DspB569ORF3426P (97% identity) | M.DfaZXC1ORF9850P | |
| 9855 | type II toxin-antitoxin system toxin CcdB | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 14635 | amino acid ABC transporter ATP-binding protein | |||
| 14640 | R | Elu1436ORF5500P (93% identity) | DfaZXC1ORF14640P | |
| 14645 | very short patch repair endonuclease | |||